RNA id: TU88199


Basic Information

Item Value
RNA id TU88199
length 6778
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G74417
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31567051 ~ 31650584 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAAAACgtactgactgttataaagtactgaaactggagactccttccattaatgttacaaaacatctccttaaagacCATACCAACATTTATCCGTTTTGTTAAACAAAaattgtttaatctgtttattattagtcttaggtAATGTAGCTCGTCCGCcagacaagtccctgtgaatgcgctgttgctatagtaacgACAACATCAGAACAGGCGAATTATTACAATgctattattttaattacagctggaaataccgtcagagctgctgtcataaaaacaaatgtaataacTGCTTCATCAATCAGATGTCAAGAACGGTGTGGTACAAACGATtgtaaaaaaacttttttgaatGGAAGCAAACAAAGCATCTGTTTCCGTAGCAACTTTCAGGCGTGATTAATGTGACGTAGTTTGTGTTTTCTAAGCAATGCGTTTATTTAGCAGACTTTATGTTCCCTTTaacttttggaaaataaaaacatacagtatgagaGAGTTCACTGAGCTTCACAGAAAGCCTTTGGGGCAAACTGTGGGTTCACGCTACAACGTTCTGAGCTCCCGACTGTATGAGCTGCTCTGTGTCTGTAAGGTCAGAGACGGAGGAGGGGGTTGTGCTATGTCTCTGGTTCCCTGGTGGAATGTGCTTCTACAGAGCAGAGTGACGCCAGCCGGGGGAAAGGGGGGAAGCGGGGTATACTGACGATCAAAAGAAAGTGGATGACAAGTGACTACAAGAGACGGTGATTATAGAAGAGGAGCAAGAAGATAAAAAACTGAATACCGCCTGTTGTTTGGTTTAAAGTGAAGCGAAATCGCAAAACAGGTCTCcaaaaaatactaaattattAAAGCAAAATCCAAAGCAGTTGGTCCACAACAGGTGAGAAAACCATGTAACACCTCTTTGTCTATAAGTCAGCCATGTCTTTCTAAAAAGCCCCACTGTGTGGTTTAGTGGAGCTTAACTGCTCATTAAACAACATGGGAAAATGTTACAGCAGCGTGCTGAGGCTTATACTGTGAACATAAATACAGGCCTCGCAACCCAACTGATCTAGGACATGCCTGTGAAAGCACCAGAGCTCTCGAAACCaccacagagaaacagaaacggCTGAAAAGTCGTTATCTCAGCAGTGTCCTGTTCAGATTCGACCAGAACTTTCAGTTTAAACAGCGTCTGGCTTTATAACACTCTGTCTACGTATTTTTGCTGAACCTTCCATTAGTATCAACTGAAAAGCAGCAAAGAGacggttattattttttaattttttttttttaatgaaaaatgtgtcCTCAGAAACATAAATGTGAATTTTACGAGGTAACTACAAACTTCTTGGTAAAATCCACACAAACTCAACAACAGTCTCACCCAGGAGGAATTTTCCCACCAATATGCCCTTGGTATACTGAAGTAACTAAAAGCCAGTTAAAACAAAGATAGGCTGAATTCAAACAAACTAATTggaggtgagagagaaaagtgctCTCTCGGACTTGCAAGAGTGCGTCGGTTTCGTGAGCATTTCACAGCCATGTGTGCCAAAAGGGTGGGAACGAAGTACCTCAGGGTCATTTCAGGGACAATATCTCTTCTTGCCTCTAAATGAATCACACTCGCCACTACCAAAGATTTCCTGATAAGATGATCTAAAGGAATGAACGCAGTGTACTCAAGTCCAAATGCTAAATCATCTTTCCTGTCTTTTCAAACAAACATTATAAGAACGGGGAAATAATCTGGCCACGAGGATCGCTCCTTTCATGGTTAAACAGCTCTGTCCGTTGACAAAAGCAGGAGCAGCATGTTTGACAGCTCCTATGAGGTACAatctgaaagcagcaggagctCTTTCTTGAAGTGTTTGGCCAGAATCAGCTGCCCACGATGGCTTTATCACCAGGAGATGAGGCGACGCTTTGCACTCGGTCCACCCTGGGTGGTCTCCTGCTCCAGCTCCACCTCCGGCAACGCAATTACAAAAGCAATTAACACTCTCGACTTCTTTTATTGCCAAAGAAGACAACGCTGCCAAGTAGGGGTGTGAGGAAATGCCACAGTGCGTATCCGCATCCATTTGGGCCGTCTCAGTATTCAGACTGAGGCCCGAAAGGGGTGTGGACTAAAGCGGAAgtggtgttttttcttttttgtaaattaaatatgatAACCACTATGTAGTAGGATTTGTACCTACAGTATCTGCAATGTTTTTCAGCTGGTTTCTATTTCGCTAATTCTAAACAAATtagtagcttaatttaaatCAGGTAATTCCTGTAAATGCATTCTGCAGGTCTTTCtctgtcctgcaagcttcatatctaaccTCTCGGtcgtatgaaagtaaaaacctcctgcttgagtgacttttttgttgcgtCCCAGAGGATCCCAGTCCGCGATGTGCACCTCTACTCTCAACCAAATGCCCTGTGGACCTTTCTGGCAACAATCTGTCACTTACTTCAACCACTATGGGCTGCGTCTTCCACCTTCCTGCCCAAAGCAGGCAGAATGGAGATAAAAGCCATCAAAGGcaaagtatataaaaataagagcTTATGGCTCAAAGCTCCAGACTTCTTGTGGTTTCCCACctactgagacacacacacacacacacacacacacacacaaaacatcctatccaaaaaagaaaagaatcccACCATCATTATGGACAGATATTTTAACTTCACTTCTCATGAAggacagaggggaaaaaaactagTGTCTGAGTTCGGGTATGTGGAACAGCATGAGAAACCACTTCCGCCCGTCATTAGCAGCCAAGTcagctgtaattacagctgCGGGTCTCCTCAGCGCCCCTGGCCATGCCGGCGTCGACGCGGACAGCTGATCAGCTTTATAGGCCACGTTCTCCCAGCTTGCAGTGGGGAAGAGGTTCCTAAGGGCACAGCGATTAGACACAAAACGAGGCTAACTGACTCACTCAACACCAAAACTACAAGGAAATTAAATCAGTTTCACGTGAAAAGCACATACGTGCGTGCAAACGCCGAGGAGAATATTCAGCGTCATACTGGATCTAATGGGATTTCTGCAgaagacattttatttgaattaaacaCAGAAGAAGAACGACGTTCATGAAAAATCAAGACTGCAACGAAGGCTACAAACTtccactaaaaacacacacaatggcagccaatcagtgatccaacattttgttattatttccaTTTCCAAGTGACccataccatatatatatatatacacacacacatacacgcagcTTTTAGACTTTGAACTTTTAAGATCATTACTAGATGATCCCAGTAACAATCTTGGCTGAATTACATACAGACGTTTTCCATGTCAAATTATACAGTGAAGATCCTCtgacgatagacctgtgattaaaaaaaataaaaataaaaaattctgtcCATTAGCGTGGTTCGATTATGTTTTGCTATTATCACTACTGTATTCGTAGATGTCCCGTGAGTATTgcatcctcctattggtggcttttagacgagCATCATAGCAACACCATGAGATTTTTAATTATGAATTTATAACGGTGCCAGAACTTTGTCGCTGGTTGTCTTTGGTCGCAATGGCACTAAAATGGCCGCCAAAGATCATATCACATTATATGTTCTAAGACCACCGATCGAAGACGTCTGAACACAGAGGGATGTGACTGAACACAGACATACGGGCGGAGCTACAAAAGTGCAAACGACTGATTAATCCCACGCAATCACCGCAGGATCGTCCTGATAAAGTCTGACCTCAATCACTATTCTATTCTGCCAAACAGTTTGtcatggttttttttcctgccagtTTTAGAAAGAACTGTGATTCCAGTTCAAAACTCTCAAATGGCTTTCTATTCACAATATTATTCTCTAAACAGCCTAAAACACAGACACTGTAGAACGTACGCAGCGCGCTATTCGTCTGATTGAACACCCTTTGAGATTCAGCAACAGAAAAGGGTGACAACACGTATTTCTGTAGTATTTTAACGTCACCTGATAAACGTAAGTTGACTACTCGGGTATCACTAGTCACTCCACAACCTCCAGAAATCCTCTTCCTACTTTTATGGGTACAGGAAAGCGGATAGTCACTCAACCAAGTCTCAGAAAGTTCTGACTTTGCGTTAGTAAGTGTACCATGCTGTACTCCTGCATCTTAAAGCTCTAATGTCTCAGCTCTGATCCACTGCTCACTCGGGTTTACTCCTGATTTGGAGTCTCACATTCCTCACATCTAGCATACTGTTTAAATCTGGCACTAATGAACTGGTTGGTGAAATGTAAACACGTTTAATCAGTGGAGTCGCTTGAGTAGTTTCCCACACGTAGTAAAAGTAGTGAAGAGGTCACTCCAAGCCAAGCTTTCTCGCCTGCTGTTTCTCTGCGAATTATATAATCACTTATTTAGACATCTGAACACAACGGCAGCCCTAGACCCCGAAAATGAAGCTCCATGACTCCTGTTCGTGTTCCAAATAACAGCAACATCGCAAATTaacaggcagtttaactgtctTTCAGTCCATCAACATGAGGTCTGATGTGattatgatatatttttcttGCAGTAAATTTCACACCGAGCCTTCCCATCAGGCGTAAACCGTGTCCAGCTGCCTCTAACACACCGAAATGAAGGCTGTAAAGAGAAACGCCAGCTAATCACTGTCACAGCAGCTTCCCCTTCCACAGCTGGAATACAGACCATAATCACAAAGCAGTACGTCTGAACGACAGGCTCACGTGCAACGCAGGAACGTTAATGAAATCAATCCTTCACGTGGTCGGAGATTAATTGAGATTATTAACTGAGATTATTGTGTCAGAGCTGAAAACTCCATTTGTCAACTCTGAGGACTTTTAGCAGCCACTGGTTAGTATTCGTAAATAACACATGGTGCCATTTGCGACTTTTGGAATCCAGAGCTTCTCAACTCCAGTCCTGGATCATTTCacgttgtgtttttttttcctgctccgGATACAATTTACAGAGGTTTTCATCATGAACTCATGAGCTGGATGGTGTGTGTCTGGAGATGAGATAACACCAAACCCTACGGTTCGGCGTGCCTTCAGGACTGAAGCCCTAACAGGATCGAAGATCTAATATATAATCAGCAGGAttgagaaatgttttatatcACGAGCTACATTATGATTTCTAACTCTTTCAATTCTGTAATGCTCTATTGGTTTTATGGcgtgtttcctccaaataccaaacatgttaaagagaaaagctgtaactctttcattcaacaaaaacaaacaaacaaaaaaaaaatacatgtaagaatatcagcaatcaaGCGGCAAAAAAGAAATACCCAATTCACCTTCAGTGTCTTGCCTTAAGCATGTAAATATATGcacagttaaataaatgttaacttatttgcatgaataaataaataaatacataaataaatgtacatttcgGGGATAAAAACTTCCAATAAAATACTTATAAGAATATCAGCAGTCAACTGCTAAAGATCTGTTATACTGACTTCttgttttaaaggtgcattaggtaagactCGTGGAGAAAAAGGATctctaatgaataaataaatggagctgaataagatttgaatcattttttttactcgCTGAGCCCGCCCCCCCATTTCCACCAATGtgcacaaagctccgcccccaagaATATGGTGGTTCAACTaaagctagcatgctaacttgAGTTACCATTAGCGAGGACTTTCATGATGTGGCTCTGAAGCGCACTCGGACATTCGACTGCTTGAAAGGCGAGTTACAGCTCTATAAACCTGCATAATGATGTCTGAGGAGGTGAAAAGGTGTTGGGGGCGtggctataaaatgactgacaacagttcaatccaaatacaaacaaatggGGACTTTCCaaactggtgttttttttttttcccccccagatACATAATACACTTATTCTGAGACAACAGCGTAACTATTTTGAaatcatttctacataatttccCACGTTATCTTTATTAGTAAGAAATGAACCATATTGACTACTgcgcctttaaaaaaaatcatcctgtTCATTTCCCTATACATCTGCATATTTATTTAGACACAGACtctatttacattatatattatagatattttaCTAAAGTTCCCCtataaaaacactgtaaaaaccCGGGCAGTCACAAGCACAAGACTGATCTACTGATTAATTATCTGATTATCTACTGATTTTATTACCCTGTTCACCTGTAGACTTACTGCTGTAAACCCTCATGGAAAATTCCAgaagcttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagggaagtAAGCTGGAGGAACTTCCGTGTTGCAGGTGAAGATTACTTTACACACCTGTCCCAGCACTACCTTTGCCATACTGTGTGCTCTCGTCATTCATTTTTGCTTTCAGTCTCAGGAAAGCCTTCAGTCGTGTGTCTGAACGTTCGCAGGATTTACCTCACTGCTTCcacactggtttttttttttaaagctgtctGCTTGCAACAGTGTGTTTATTCAGCTGACTTTCTCACGCATGTAGGCCAGGGTTTCATTAGAACACCATAATGTCTGGATAGTggtgattaaaatataaataagtcaAACTCAGTGTTGTCCAGAGTGTTAAAGCTGACCACTGACACAGAAACATCTGCTACAACCTCTCTGCTACATACTGACTGCTACAACCTTACCTTACTGCTACAACCTCTCTGCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87968 lncRNA downstream 256142 31236413 ~ 31310909 (-) False G74256
TU87974 lncRNA downstream 290030 31247090 ~ 31277021 (-) False rem2
TU87966 lncRNA downstream 291577 31236413 ~ 31275474 (-) True G74256
TU87963 lncRNA downstream 340463 31225234 ~ 31226588 (-) True G74255
TU87756 lncRNA downstream 450615 31056485 ~ 31116436 (-) True G74060
TU88244 lncRNA upstream 85708 31736292 ~ 31785757 (-) True G74458
TU88271 lncRNA upstream 93767 31744351 ~ 31745462 (-) True G74479
TU88242 lncRNA upstream 102537 31753121 ~ 31756304 (-) True G74457
TU88243 lncRNA upstream 102537 31753121 ~ 31756304 (-) False G74457
TU88356 lncRNA upstream 243267 31893851 ~ 31901557 (-) True G74553
XM_034303857.1 mRNA downstream 22417 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 33793 31528370 ~ 31533258 (-) True psmb5
XM_026936968.2 mRNA downstream 64673 31379473 ~ 31502378 (-) False LOC113540461
XM_026936967.2 mRNA downstream 64673 31379473 ~ 31502378 (-) True LOC113540461
XM_034304039.1 mRNA downstream 97410 31379473 ~ 31469641 (-) False LOC113540461
XM_026935889.2 mRNA upstream 59480 31710064 ~ 31727552 (-) True nmnat2
XM_034303863.1 mRNA upstream 1172974 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 1322201 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 1480503 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 1480503 33131087 ~ 33135467 (-) False c4h14orf119
TU87656 other downstream 791232 30773463 ~ 30775819 (-) True ccl20l
TU87613 other downstream 823225 30741669 ~ 30743826 (-) False LOC113540055
TU87233 other downstream 1544526 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 1836194 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 1991324 29564602 ~ 29575727 (-) False LOC113540665
LOC113540068 other upstream 216498 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 219934 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 220575 31871159 ~ 31871639 (-) False LOC117597010
TU88350 other upstream 223725 31874309 ~ 31874827 (-) True G74547
TU88353 other upstream 229450 31880034 ~ 31880556 (-) True G74550

Expression Profile