RNA id: TU88243


Basic Information

Item Value
RNA id TU88243
length 1705
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G74457
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31753121 ~ 31756304 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGAATTTCTCAAACTGAGAGCACATTCGGCATGAAAGTGTGTTATGGATACACAATGTTATTTCACTGAAAGGCCACTAGACGGCGCATCATTGATCAAATATACTGTTTTTAGGGATCTTGGAAAGTGCTCGTGAAATTTCATATGCAAGGTGTTTTaaggttaattaattaatcccTAAAGAACCAATAAAGAATCTTTTTCCCCTAAAAGCGCAAATTGTTTTAAAGACATCTGCAGAATTTCTGAGCATTCCCAAAATTCCCATCTAATCAACGCACTACTCATTTCCCAACATTTTCCAACATTAAATCTGGAAAAGAAATGACAACAAGTGAAGAGGACATTTTTGAACTTTATTGAAGGCATAGCTGACTTCAGCATGTCAAAAGAGGCAGGAACAATAAATGCAGCCCATCTCAGGAGGAGACATCGCCACCTGATCTGACCTCTTGCAAAACCCTCTGAAAGATTTGCTGGATATCTCCTTGACTCCTAAATACACAAAACTTTATTTTCATGCAGACTTCCCAAAGAGATTCTCATAAAAGGTGGACGGGCGTCGTGGTAGCTTTCACTGTTCAGTGGCTGTAAAAAGCTGGTTGTTTCTTTGACATGTACTGGAATGTTAATATTGCCACTGTCAGAAACGGAGGAGAGGAAAAGGGTCTTATTCACATTTAATACGCCGTGATCAGCAGGGCTTCAGGAGCAGAACCCGAGCGCTGTTTATCAAACTCGTATGTCTGGGTGAGAAAAGGGACAAAGAGGGACTGGACTGAAGCCTTATTGTGCTCATAGATCTTTTGATACATTATAAAGTAATTATTTCCTTAAAGTTTAGCTTGTTTTATTATGCcactttaaatcttttaaatacatttgtaaATGCAACGAGAAGCACAATCACACAGCAGATAGAGATATCATTTAAAGTCGTCTTCAATAAAAGTCtctacatgaaaataaaaatgtgctttcCCTTCATACATGACACTGTCATCCTTACAACCTTCCGGCCGAAAAGGCTGGTACAGCataaccagaaaaagaaaagatgctCAACATGTTTAGACATCGAAGCTTATCCAACACGACCTCCGGCCAGAAACTGTCGTTATTAAACAGAGGCACAAACCTAGGCTTTACATCACCAAATTaacacttctttctttttttttttttttttttttctttttttttgtttttttgtccctTAGAGGAAGCAGAGTGGTGATCAGAGAGGGAGTTCCCTCAAAGTCCCCCTCCATGTGACCGGTTCTGCAGCGGCTACATGCTGAGCAGTGCGGTATATCAGGTGCTTTTTATGCCCTCCTTGCCTTAGAGGCGCAGAAAGacaaagatagagagacagagagaaagagagagagaggagaaggcTGCACCTCCCCTGTCGCTCAGACGAGCGGTTGCTTTGGAGCGTGTCGGTTCACGCCGGCCGCCGTCTCCAGCCTCCACACGCAGATTAACGCCGGAAAACAAATTTCCGATTGGAGCTTGTGGTTTTGCACCTCTTCTTTGTCTTCGGTATCATTTTCGCACAAGTGCTTTGCACCCGCTTTGTGTATCTCTTCAGTGCGGCGGGTTCATAGTGCCGTGGCCGCgctgctgcttctgcttctgctgcATGAGGAGCTGCTCCAGCGCAGAAGGGCCTGGCTGCATCATCGAGCTTGACCAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88271 lncRNA downstream 7659 31744351 ~ 31745462 (-) True G74479
TU88199 lncRNA downstream 102537 31567051 ~ 31650584 (-) True G74417
TU87968 lncRNA downstream 442212 31236413 ~ 31310909 (-) False G74256
TU87974 lncRNA downstream 476100 31247090 ~ 31277021 (-) False rem2
TU87966 lncRNA downstream 477647 31236413 ~ 31275474 (-) True G74256
TU88356 lncRNA upstream 137547 31893851 ~ 31901557 (-) True G74553
XR_004578081.1 lncRNA upstream 152344 31908648 ~ 31909914 (-) False LOC117597178
XR_004578080.1 lncRNA upstream 152344 31908648 ~ 31909914 (-) False LOC117597178
XR_004578079.1 lncRNA upstream 152344 31908648 ~ 31909914 (-) True LOC117597178
XR_004577914.1 lncRNA upstream 355282 32111586 ~ 32112411 (-) True LOC113540655
XM_026935889.2 mRNA downstream 25569 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 208487 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 219863 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 283480 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 1067254 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 1216481 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 1374783 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 1374783 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 1374783 33131087 ~ 33134319 (-) True c4h14orf119
TU87656 other downstream 977302 30773463 ~ 30775819 (-) True ccl20l
TU87613 other downstream 1009295 30741669 ~ 30743826 (-) False LOC113540055
TU87233 other downstream 1730596 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 2022264 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 2177394 29564602 ~ 29575727 (-) False LOC113540665
LOC113540068 other upstream 110778 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 114214 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 114855 31871159 ~ 31871639 (-) False LOC117597010
TU88350 other upstream 118005 31874309 ~ 31874827 (-) True G74547
TU88353 other upstream 123730 31880034 ~ 31880556 (-) True G74550

Expression Profile