RNA id: TU88271


Basic Information

Item Value
RNA id TU88271
length 1088
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G74479
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31744351 ~ 31745462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAGGCCGAGTAGCTGGATCCAGCTGATCTGTTCGTCCGAGCTGTAGCTTTGGTCGTCAGTCTCGTTGCTGAAGTCTCGGAGGTGATGCAGCTCAAACAGGTTAATAACTGTTATGTGGACGAGCTGCTGAGAGCTGAAGGCTTTCTGGAGAATCAGTCGCTGTAATagagccattaaaaaaaaaaaaaaagagagactgtgtgtataCTGTCACTACACGACTAAACATTTGAACCGAGTGCGTAAGTGTGTAATACGAGCGGCGAGCTTAGGGACAGAAAAGATCCAGATGCACATAAAAGGCTGTCTACAGTTAACAAACATCAGCCATTAGCCAGTGGACCAGAGCATCAGCACAGCGTTGAGCAAAATTCCCTTCACATGAGAAGATGTTTCAGTAAAGCGGGTCTCTTAACAGCCAaaaggtgtattttttttgtggttcacaatattttattttggataTTTTGTCCTGAGCCATGTGGAGTCTAGTATAATTTATAGTTCAGCAGCCCAAACTGTTACCGctgtttaattttacagtttaaatgcTTTATATTGTGTTAgaaacatacatacagtatccACTGACCTGGCAGCCTTcatgaatgatttaaaaatgtttttggttCACGCAGATATTACATGCAGCCTAAACCAGCTGCACTACTGCAGTGATGTTTTTCACCTGATCTCCATATGATTAAACACTTCCTTCTAACTACATCCTCATCAGAGTGAAAGACGCCGCCCGTGTACCTGAAACTGCTCTTCCAGCTTCTCCCTCAGCGCACCGAGTTTCTCCAGGCTTTTGCTGAGGTAAACGTGTCCGTGGAACTTGATGAAAGCCTTGATGAAATCGGACACGTTCCACTTCGTTTTGACCTCATCACGGCTGCAGAGGTACAGTCAAGAACAGCTCATGGATCTCACATCACATCATTAAACCATATAACTGCtgctaaaatatataaatacttcCCTAATTTATTGACTCATACTGTACATCTGTGATACTACAGATATAAATCAAACACCAGTGTTAAAAAAACTTCTAAAGAAAACTCCGTGTACCTCTCGAGAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88199 lncRNA downstream 93767 31567051 ~ 31650584 (-) True G74417
TU87968 lncRNA downstream 433442 31236413 ~ 31310909 (-) False G74256
TU87974 lncRNA downstream 467330 31247090 ~ 31277021 (-) False rem2
TU87966 lncRNA downstream 468877 31236413 ~ 31275474 (-) True G74256
TU87963 lncRNA downstream 517763 31225234 ~ 31226588 (-) True G74255
TU88242 lncRNA upstream 7659 31753121 ~ 31756304 (-) True G74457
TU88243 lncRNA upstream 7659 31753121 ~ 31756304 (-) False G74457
TU88356 lncRNA upstream 148389 31893851 ~ 31901557 (-) True G74553
XR_004578081.1 lncRNA upstream 163186 31908648 ~ 31909914 (-) False LOC117597178
XR_004578080.1 lncRNA upstream 163186 31908648 ~ 31909914 (-) False LOC117597178
XM_026935889.2 mRNA downstream 16799 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 199717 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 211093 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 274710 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 1078096 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 1227323 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 1385625 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 1385625 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 1385625 33131087 ~ 33134319 (-) True c4h14orf119
TU87656 other downstream 968532 30773463 ~ 30775819 (-) True ccl20l
TU87613 other downstream 1000525 30741669 ~ 30743826 (-) False LOC113540055
TU87233 other downstream 1721826 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 2013494 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 2168624 29564602 ~ 29575727 (-) False LOC113540665
LOC113540068 other upstream 121620 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 125056 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 125697 31871159 ~ 31871639 (-) False LOC117597010
TU88350 other upstream 128847 31874309 ~ 31874827 (-) True G74547
TU88353 other upstream 134572 31880034 ~ 31880556 (-) True G74550

Expression Profile