RNA id: TU88350


Basic Information

Item Value
RNA id TU88350
length 354
RNA type TUCP
GC content 0.44
exon number 2
gene id G74547
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31874309 ~ 31874827 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attcagctaagaccattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcaaattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttagtcTGTCCTGCAACTACACAACAAGTTATACAGGAGACTACCTGCACTGGTACAggcaatatccaaaatctaaacccgagttccttctttatatttctccaagtggagctctgagtcccaaCCCTcccccaagaatgtctgctaaatTTCCTGGagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88244 lncRNA downstream 88552 31736292 ~ 31785757 (-) True G74458
TU88242 lncRNA downstream 118005 31753121 ~ 31756304 (-) True G74457
TU88243 lncRNA downstream 118005 31753121 ~ 31756304 (-) False G74457
TU88271 lncRNA downstream 128847 31744351 ~ 31745462 (-) True G74479
TU88199 lncRNA downstream 223725 31567051 ~ 31650584 (-) True G74417
TU88356 lncRNA upstream 19024 31893851 ~ 31901557 (-) True G74553
XR_004578081.1 lncRNA upstream 33821 31908648 ~ 31909914 (-) False LOC117597178
XR_004578080.1 lncRNA upstream 33821 31908648 ~ 31909914 (-) False LOC117597178
XR_004578079.1 lncRNA upstream 33821 31908648 ~ 31909914 (-) True LOC117597178
XR_004577914.1 lncRNA upstream 236759 32111586 ~ 32112411 (-) True LOC113540655
XM_026935889.2 mRNA downstream 146757 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 329675 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 341051 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 404668 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 948731 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 1097958 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 1256260 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 1256260 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 1256260 33131087 ~ 33134319 (-) True c4h14orf119
LOC117597010 other downstream 2435 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other downstream 2670 31871159 ~ 31871639 (-) False LOC117597010
LOC113540068 other downstream 4301 31867082 ~ 31870008 (-) True LOC113540068
TU87656 other downstream 1098490 30773463 ~ 30775819 (-) True ccl20l
TU87613 other downstream 1130483 30741669 ~ 30743826 (-) False LOC113540055
TU88353 other upstream 5207 31880034 ~ 31880556 (-) True G74550
LOC117597011 other upstream 8116 31882943 ~ 31883607 (-) True LOC117597011
LOC117597121 other upstream 30799 31905626 ~ 31910974 (-) True LOC117597121
LOC117597180 other upstream 56478 31931305 ~ 31932063 (-) True LOC117597180
TU88423 other upstream 191985 32066812 ~ 32067337 (-) True G74607

Expression Profile