RNA id: TU88389


Basic Information

Item Value
RNA id TU88389
length 264
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G74573
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32207361 ~ 32207824 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttcattcagctaagaccattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtaggtgaaggtgttaatgttactctgtcctgcaaataTGACACAAGAGCTACAGGAAATtacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatatttatgaaagTGGAGCTATGAGTCCAGATCTCcccc

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577980.1 lncRNA upstream 344204 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 344204 31859960 ~ 31863157 (+) False LOC117597031
TU88148 lncRNA upstream 359495 31806726 ~ 31847866 (+) False LOC113540254
TU88141 lncRNA upstream 359495 31822525 ~ 31847866 (+) False LOC113540254
TU88144 lncRNA upstream 359611 31804155 ~ 31847750 (+) False LOC113540254
TU88394 lncRNA downstream 76384 32284208 ~ 32296534 (+) True G74578
TU88396 lncRNA downstream 110608 32318432 ~ 32340074 (+) True G74580
XR_004577915.1 lncRNA downstream 325022 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 481602 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 499269 32707093 ~ 32707498 (+) True G74655
XM_026936384.2 mRNA upstream 102070 32081919 ~ 32105291 (+) False LOC113540131
XM_026936385.2 mRNA upstream 102070 32081919 ~ 32105291 (+) False LOC113540131
XM_026936383.2 mRNA upstream 102070 32081919 ~ 32105291 (+) False LOC113540131
XM_034303207.1 mRNA upstream 102070 32081919 ~ 32105291 (+) False LOC113540131
XM_034303208.1 mRNA upstream 102070 32081919 ~ 32105291 (+) False LOC113540131
XM_034303860.1 mRNA downstream 109164 32316988 ~ 32319907 (+) True LOC117597128
XM_034303675.1 mRNA downstream 926531 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 929227 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 966650 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 966650 33174474 ~ 33249659 (+) False chd8
TU88369 other upstream 164208 31987395 ~ 32043153 (+) False LOC117596940
TU88370 other upstream 164208 31987395 ~ 32043153 (+) False LOC117596940
LOC117596930 other upstream 171768 32034799 ~ 32035593 (+) True LOC117596930
LOC117596940 other upstream 208230 31998544 ~ 31999131 (+) True LOC117596940
LOC117597124 other upstream 232293 31974340 ~ 31975068 (+) True LOC117597124
LOC117596932 other downstream 5435 32213259 ~ 32214313 (+) True LOC117596932
LOC117597126 other downstream 40094 32247918 ~ 32261238 (+) True LOC117597126
LOC117597127 other downstream 61520 32269344 ~ 32272134 (+) True LOC117597127
LOC117596951 other downstream 66211 32274035 ~ 32274523 (+) True LOC117596951
LOC117596933 other downstream 72190 32280014 ~ 32280776 (+) True LOC117596933

Expression Profile