RNA id: TU88393


Basic Information

Item Value
RNA id TU88393
length 341
RNA type TUCP
GC content 0.43
exon number 2
gene id G74577
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32280217 ~ 32295365 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGGCTGCAGACAACAGCATTAAACCAGAaaaaccctccagatctgtaaCTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAAGGCAGTGGACATGTCACTAAAGCTAAACCACCTCATCCACGATTGTCTATTAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGAC

Function

GO:

id name namespace
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88389 lncRNA upstream 72393 32207361 ~ 32207824 (+) True G74573
XR_004577980.1 lncRNA upstream 417060 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 417060 31859960 ~ 31863157 (+) False LOC117597031
TU88141 lncRNA upstream 432351 31822525 ~ 31847866 (+) False LOC113540254
TU88131 lncRNA upstream 432467 31810595 ~ 31847750 (+) False LOC113540254
TU88396 lncRNA downstream 23067 32318432 ~ 32340074 (+) True G74580
XR_004577915.1 lncRNA downstream 237481 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 394061 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 411728 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 442738 32738103 ~ 32740111 (+) True LOC117596969
XM_026936385.2 mRNA upstream 174926 32081919 ~ 32105291 (+) False LOC113540131
XM_034303860.1 mRNA downstream 21623 32316988 ~ 32319907 (+) True LOC117597128
XM_034303675.1 mRNA downstream 838990 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 841686 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 879109 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 879109 33174474 ~ 33249659 (+) False chd8
LOC117596951 other upstream 5694 32274035 ~ 32274523 (+) True LOC117596951
LOC117597127 other upstream 8083 32269344 ~ 32272134 (+) True LOC117597127
LOC117597126 other upstream 18979 32247918 ~ 32261238 (+) True LOC117597126
LOC117596932 other upstream 65904 32213259 ~ 32214313 (+) True LOC117596932
TU88369 other upstream 237064 31987395 ~ 32043153 (+) False LOC117596940
LOC117596959 other downstream 40723 32336088 ~ 32336582 (+) True LOC117596959
LOC117596952 other downstream 42946 32338311 ~ 32338811 (+) True LOC117596952
LOC117596931 other downstream 45130 32340495 ~ 32341411 (+) True LOC117596931
LOC117596942 other downstream 60631 32355996 ~ 32356585 (+) True LOC117596942
LOC117597129 other downstream 67276 32362641 ~ 32364748 (+) True LOC117597129

Expression Profile