RNA id: TU88396


Basic Information

Item Value
RNA id TU88396
length 238
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G74580
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32318432 ~ 32340074 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacaaacaaggaaggaagtggggcagacaacaaaagaagaatttcaaaaaatgtgagtaagggagtcctctggtggtctggaggggaattgtccatgGTGgacgtgacaaactgaaaatctgcataactgagaattgtgcaaaataaaaaacaaaatataaaacacaatgtcctccacacaagaaggttggatctgcttacacacaccagctcacagtgcagcagctgcaaaggaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88394 lncRNA upstream 21898 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 110608 32207361 ~ 32207824 (+) True G74573
XR_004577980.1 lncRNA upstream 455275 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 455275 31859960 ~ 31863157 (+) False LOC117597031
TU88141 lncRNA upstream 470566 31822525 ~ 31847866 (+) False LOC113540254
XR_004577915.1 lncRNA downstream 192772 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 349352 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 367019 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 398029 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 556730 32896804 ~ 32924735 (+) True G74672
XM_026936385.2 mRNA upstream 213141 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 794281 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 796977 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 834400 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 834400 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 834400 33174474 ~ 33249659 (+) False chd8
LOC117596937 other upstream 22866 32294241 ~ 32295566 (+) True LOC117596937
TU88393 other upstream 23067 32280217 ~ 32295365 (+) True G74577
LOC117596933 other upstream 37656 32280014 ~ 32280776 (+) True LOC117596933
LOC117596951 other upstream 43909 32274035 ~ 32274523 (+) True LOC117596951
LOC117597127 other upstream 46298 32269344 ~ 32272134 (+) True LOC117597127
LOC117596931 other downstream 421 32340495 ~ 32341411 (+) True LOC117596931
LOC117596942 other downstream 15922 32355996 ~ 32356585 (+) True LOC117596942
LOC117597129 other downstream 22567 32362641 ~ 32364748 (+) True LOC117597129
LOC117597130 other downstream 27805 32367879 ~ 32369140 (+) True LOC117597130
LOC117596935 other downstream 29785 32369859 ~ 32370818 (+) True LOC117596935

Expression Profile