RNA id: TU88423


Basic Information

Item Value
RNA id TU88423
length 362
RNA type TUCP
GC content 0.42
exon number 2
gene id G74607
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32066812 ~ 32067337 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gctaagaccattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccacttttcACAACTCCtaaagttgtagatgaaggtgttaatgttactctgtcctgcaaataTGACACTACCAGTACTGCAGCAAACACCTACCTGcactggtacagacaatatccaaaatctaaacctgagttccttctgTACATCACTGCAAGTGGACAGAAAAATGTCCCTATTTCACCACATCTGTCTGCTGAAgttgatgataaaaataaacgagtggatcttctcatctcctctgctgctgtgtcagactctgcactatactactgtgctctcg

Function

GO:

id name namespace
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578081.1 lncRNA downstream 156898 31908648 ~ 31909914 (-) False LOC117597178
XR_004578080.1 lncRNA downstream 156898 31908648 ~ 31909914 (-) False LOC117597178
XR_004578079.1 lncRNA downstream 156898 31908648 ~ 31909914 (-) True LOC117597178
TU88356 lncRNA downstream 165255 31893851 ~ 31901557 (-) True G74553
TU88243 lncRNA downstream 310508 31753121 ~ 31756304 (-) False G74457
XR_004577914.1 lncRNA upstream 44249 32111586 ~ 32112411 (-) True LOC113540655
TU88436 lncRNA upstream 96717 32164054 ~ 32164414 (-) True G74619
TU88439 lncRNA upstream 133028 32200365 ~ 32200804 (-) True G74622
XR_004577913.1 lncRNA upstream 134744 32202081 ~ 32202854 (-) True LOC117596963
TU88457 lncRNA upstream 560224 32627561 ~ 32627996 (-) True G74640
XM_026935889.2 mRNA downstream 339260 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 522178 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 533554 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 597171 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 756221 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 905448 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 1063750 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 1063750 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 1063750 33131087 ~ 33134319 (-) True c4h14orf119
LOC117597180 other downstream 134749 31931305 ~ 31932063 (-) True LOC117597180
LOC117597121 other downstream 155838 31905626 ~ 31910974 (-) True LOC117597121
LOC117597011 other downstream 183205 31882943 ~ 31883607 (-) True LOC117597011
TU88353 other downstream 186256 31880034 ~ 31880556 (-) True G74550
TU88350 other downstream 191985 31874309 ~ 31874827 (-) True G74547
TU88425 other upstream 7046 32074383 ~ 32113455 (-) True LOC117596957
LOC117596957 other upstream 7051 32074388 ~ 32074888 (-) False LOC117596957
LOC117595679 other upstream 58235 32125572 ~ 32126462 (-) True LOC117595679
TU88430 other upstream 64614 32131951 ~ 32132467 (-) True LOC117596961
LOC117596961 other upstream 64624 32131961 ~ 32132436 (-) False LOC117596961

Expression Profile