RNA id: TU88432


Basic Information

Item Value
RNA id TU88432
length 438
RNA type TUCP
GC content 0.42
exon number 2
gene id G74615
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32149195 ~ 32149797 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gacactgtcatgtgatgctgtggggcggagcttcatcaacctttatcaTGTTAACAtttcagagtacagaaagaatattttcattcagctaagaccattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcaaatacagtgtttcagtaaacaccctgcagtggtacagacaatatccaaaatctaaacctgagttccttcttttCATCACTCCAAGTGGATTTAAAACTGACCCTCTTCCATCAGGTCTGTTTCCTAAAgttgatgataaaaataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctggcgcc

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577914.1 lncRNA downstream 36784 32111586 ~ 32112411 (-) True LOC113540655
XR_004578081.1 lncRNA downstream 239281 31908648 ~ 31909914 (-) False LOC117597178
XR_004578080.1 lncRNA downstream 239281 31908648 ~ 31909914 (-) False LOC117597178
XR_004578079.1 lncRNA downstream 239281 31908648 ~ 31909914 (-) True LOC117597178
TU88356 lncRNA downstream 247638 31893851 ~ 31901557 (-) True G74553
TU88436 lncRNA upstream 14257 32164054 ~ 32164414 (-) True G74619
TU88439 lncRNA upstream 50568 32200365 ~ 32200804 (-) True G74622
XR_004577913.1 lncRNA upstream 52284 32202081 ~ 32202854 (-) True LOC117596963
TU88457 lncRNA upstream 477764 32627561 ~ 32627996 (-) True G74640
XR_004577912.1 lncRNA upstream 497484 32647281 ~ 32648098 (-) True LOC117596962
XM_026935889.2 mRNA downstream 421643 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 604561 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 615937 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 679554 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 673761 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 822988 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 981290 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 981290 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 981290 33131087 ~ 33134319 (-) True c4h14orf119
LOC117596956 other downstream 4252 32144459 ~ 32144943 (-) True LOC117596956
TU88430 other downstream 16728 32131951 ~ 32132467 (-) True LOC117596961
LOC117596961 other downstream 16759 32131961 ~ 32132436 (-) False LOC117596961
LOC117595679 other downstream 22733 32125572 ~ 32126462 (-) True LOC117595679
TU88425 other downstream 35740 32074383 ~ 32113455 (-) True LOC117596957
LOC113540132 other upstream 18785 32168582 ~ 32169236 (-) True LOC113540132
LOC117596948 other upstream 25121 32174918 ~ 32175410 (-) True LOC117596948
LOC117597125 other upstream 26010 32175807 ~ 32178124 (-) True LOC117597125
TU88440 other upstream 53597 32203394 ~ 32203905 (-) True LOC117596946
LOC117596946 other upstream 53598 32203395 ~ 32203898 (-) False LOC117596946

Expression Profile