RNA id: TU88439


Basic Information

Item Value
RNA id TU88439
length 267
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G74622
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32200365 ~ 32200804 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagaaatggctcaactatacaacttactgtacatagtgagatacacaccactgattctcactctagctacagcaggcagttttgcagataaaattgggccgacggatgaagataccaacattatcaggaatgaaacagacactgttactctgaaatgttcatatgaaacAAGCAGCAATGACATTTGgctttactggtacaaacaatatcctaacagtgcaccacagtttttactgttAAAAGGCGCAAAGTCACGAAGTTCTGAGG

Function

GO: NA

KEGG:

id description
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88436 lncRNA downstream 35951 32164054 ~ 32164414 (-) True G74619
XR_004577914.1 lncRNA downstream 87954 32111586 ~ 32112411 (-) True LOC113540655
XR_004578081.1 lncRNA downstream 290451 31908648 ~ 31909914 (-) False LOC117597178
XR_004578080.1 lncRNA downstream 290451 31908648 ~ 31909914 (-) False LOC117597178
XR_004578079.1 lncRNA downstream 290451 31908648 ~ 31909914 (-) True LOC117597178
XR_004577913.1 lncRNA upstream 1277 32202081 ~ 32202854 (-) True LOC117596963
TU88457 lncRNA upstream 426757 32627561 ~ 32627996 (-) True G74640
XR_004577912.1 lncRNA upstream 446477 32647281 ~ 32648098 (-) True LOC117596962
TU88463 lncRNA upstream 450983 32651787 ~ 32652241 (-) True G74646
TU88464 lncRNA upstream 458728 32659532 ~ 32659961 (-) True G74647
XM_026935889.2 mRNA downstream 472813 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 655731 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 667107 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 730724 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 622754 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 771981 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 930283 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 930283 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 930283 33131087 ~ 33134319 (-) True c4h14orf119
LOC117597125 other downstream 22241 32175807 ~ 32178124 (-) True LOC117597125
LOC117596948 other downstream 24955 32174918 ~ 32175410 (-) True LOC117596948
LOC113540132 other downstream 31129 32168582 ~ 32169236 (-) True LOC113540132
TU88432 other downstream 50568 32149195 ~ 32149797 (-) True G74615
LOC117596956 other downstream 55422 32144459 ~ 32144943 (-) True LOC117596956
TU88440 other upstream 2590 32203394 ~ 32203905 (-) True LOC117596946
LOC117596946 other upstream 2591 32203395 ~ 32203898 (-) False LOC117596946
LOC117596950 other upstream 432409 32633213 ~ 32633711 (-) True LOC117596950
TU88461 other upstream 443220 32644024 ~ 32644534 (-) True G74644
LOC117597135 other upstream 457557 32658361 ~ 32658922 (-) True LOC117597135

Expression Profile