RNA id: TU88463


Basic Information

Item Value
RNA id TU88463
length 290
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G74646
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32651787 ~ 32652241 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

accattcatcatgctcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcaactACACAACAAGTGATAGAGCAAACACCtacctgcagtggtacagacaatatccaaaatctaaacctgagttccttcttttCATCGATCCAAGTGGATTTACAACTGACCCTCTTCCATCACGTCTGTTTCCTAAagttgatgataataataaacgag

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05320 Autoimmune thyroid disease
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577912.1 lncRNA downstream 3689 32647281 ~ 32648098 (-) True LOC117596962
TU88457 lncRNA downstream 23791 32627561 ~ 32627996 (-) True G74640
XR_004577913.1 lncRNA downstream 448933 32202081 ~ 32202854 (-) True LOC117596963
TU88439 lncRNA downstream 450983 32200365 ~ 32200804 (-) True G74622
TU88436 lncRNA downstream 487373 32164054 ~ 32164414 (-) True G74619
TU88464 lncRNA upstream 7291 32659532 ~ 32659961 (-) True G74647
XR_004577920.1 lncRNA upstream 115347 32767588 ~ 32769282 (-) True LOC117596968
XR_004577919.1 lncRNA upstream 197686 32849927 ~ 32851375 (-) True LOC117596967
TU88526 lncRNA upstream 209966 32862207 ~ 32862659 (-) True G74702
XR_004577918.1 lncRNA upstream 219505 32871746 ~ 32873023 (-) True LOC117596966
XM_026935889.2 mRNA downstream 924235 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1107153 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1118529 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 1182146 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 171317 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 320544 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 478846 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 478846 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 478846 33131087 ~ 33134319 (-) True c4h14orf119
TU88461 other downstream 7253 32644024 ~ 32644534 (-) True G74644
LOC117596950 other downstream 18076 32633213 ~ 32633711 (-) True LOC117596950
TU88440 other downstream 447882 32203394 ~ 32203905 (-) True LOC117596946
LOC117596946 other downstream 447889 32203395 ~ 32203898 (-) False LOC117596946
LOC117597125 other downstream 473663 32175807 ~ 32178124 (-) True LOC117597125
LOC117597135 other upstream 6120 32658361 ~ 32658922 (-) True LOC117597135
LOC117596929 other upstream 9651 32661892 ~ 32662467 (-) True LOC117596929
TU88467 other upstream 9742 32661983 ~ 32662476 (-) False LOC117596929
TU88466 other upstream 12657 32664898 ~ 32665420 (-) False LOC117596929
LOC117596927 other upstream 124725 32776966 ~ 32777798 (-) True LOC117596927

Expression Profile