RNA id: TU88464


Basic Information

Item Value
RNA id TU88464
length 304
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G74647
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32659532 ~ 32659961 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagaatcctcacagagctgtgttcagaaatggctcaactatacaacttactgtacatagtgagatacacaccactgattctcactctagctacagcaggcagttttgcagataaaattgggccgacggatgaagataccaacattatcgggaaagaaacagacactgttactctgaaatgttcatatgagacAAACAGCAATGACATTTATctttactggtacaaacaatatcctaacagcgcaccacagtttttactgtataaaggcgCAAGGTCAAGATCTGGAGAGCGCAAACCCACTGAC

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88463 lncRNA downstream 7291 32651787 ~ 32652241 (-) True G74646
XR_004577912.1 lncRNA downstream 11434 32647281 ~ 32648098 (-) True LOC117596962
TU88457 lncRNA downstream 31536 32627561 ~ 32627996 (-) True G74640
XR_004577913.1 lncRNA downstream 456678 32202081 ~ 32202854 (-) True LOC117596963
TU88439 lncRNA downstream 458728 32200365 ~ 32200804 (-) True G74622
XR_004577920.1 lncRNA upstream 107627 32767588 ~ 32769282 (-) True LOC117596968
XR_004577919.1 lncRNA upstream 189966 32849927 ~ 32851375 (-) True LOC117596967
TU88526 lncRNA upstream 202246 32862207 ~ 32862659 (-) True G74702
XR_004577918.1 lncRNA upstream 211785 32871746 ~ 32873023 (-) True LOC117596966
XR_004578073.1 lncRNA upstream 286173 32946134 ~ 32947158 (-) True LOC117597171
XM_026935889.2 mRNA downstream 931980 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1114898 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1126274 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 1189891 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 163597 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 312824 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 471126 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 471126 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 471126 33131087 ~ 33134319 (-) True c4h14orf119
LOC117597135 other downstream 610 32658361 ~ 32658922 (-) True LOC117597135
TU88461 other downstream 14998 32644024 ~ 32644534 (-) True G74644
LOC117596950 other downstream 25821 32633213 ~ 32633711 (-) True LOC117596950
TU88440 other downstream 455627 32203394 ~ 32203905 (-) True LOC117596946
LOC117596946 other downstream 455634 32203395 ~ 32203898 (-) False LOC117596946
LOC117596929 other upstream 1931 32661892 ~ 32662467 (-) True LOC117596929
TU88467 other upstream 2022 32661983 ~ 32662476 (-) False LOC117596929
TU88466 other upstream 4937 32664898 ~ 32665420 (-) False LOC117596929
LOC117596927 other upstream 117005 32776966 ~ 32777798 (-) True LOC117596927
LOC117596938 other upstream 143593 32803554 ~ 32804222 (-) True LOC117596938

Expression Profile