RNA id: TU88470


Basic Information

Item Value
RNA id TU88470
length 316
RNA type TUCP
GC content 0.42
exon number 2
gene id G74651
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32688317 ~ 32688797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaccattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcaaataTCAAATCAGTGGTACAAACAACtacctgcagtggtacagacaatatccaaaatctaaacccgagttccttctttatatttctcaaactggagctctgagtcccaaCCCTcccccaagaatgtctgctaaagttgatgataataataaacgagtggatctgctcatctcctctgctgctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577915.1 lncRNA upstream 154711 32532846 ~ 32533606 (+) True LOC117596964
TU88396 lncRNA upstream 348243 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 391783 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 480493 32207361 ~ 32207824 (+) True G74573
XR_004577981.1 lncRNA upstream 825160 31859960 ~ 31863157 (+) False LOC117597031
XR_004577916.1 lncRNA downstream 629 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 18296 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 49306 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 208007 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA downstream 226743 32915540 ~ 32915973 (+) True G74676
XM_034303860.1 mRNA upstream 368410 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 583026 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 445558 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 448254 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 485677 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 485677 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 485677 33174474 ~ 33249659 (+) False chd8
LOC117597134 other upstream 91375 32594836 ~ 32596942 (+) True LOC117597134
LOC117596941 other upstream 101651 32586071 ~ 32586666 (+) True LOC117596941
TU88419 other upstream 101727 32586072 ~ 32586590 (+) False LOC117596941
LOC117596955 other upstream 127548 32560263 ~ 32560769 (+) True LOC117596955
LOC117597133 other upstream 135013 32542925 ~ 32553304 (+) True LOC117597133
XR_004577917.1 other downstream 629 32689426 ~ 32690032 (+) False LOC117596965
LOC117596958 other downstream 4806 32693603 ~ 32694103 (+) True LOC117596958
LOC117597136 other downstream 10980 32699777 ~ 32714861 (+) True LOC117597136
TU88479 other downstream 24376 32713173 ~ 32720432 (+) False LOC117596949
LOC117596943 other downstream 26157 32714954 ~ 32715523 (+) True LOC117596943

Expression Profile