RNA id: TU88477


Basic Information

Item Value
RNA id TU88477
length 241
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G74655
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32707093 ~ 32707498 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgtagttgtagatgaaggtgataatgttactctgtcctgcagctACAGTGGTACAGTAAGAaacctgcagtggtacagacaatatcaaaAATCTAAACCCGAGTTTCTTCTTTATGTTCATGAAAGTGGAGATATGAGTCCAGATCTCccccc

Function

GO: NA

KEGG:

id description
ko05323 Rheumatoid arthritis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577916.1 lncRNA upstream 17070 32689426 ~ 32690023 (+) True LOC117596965
XR_004577915.1 lncRNA upstream 173487 32532846 ~ 32533606 (+) True LOC117596964
TU88396 lncRNA upstream 367019 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 410559 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 499269 32207361 ~ 32207824 (+) True G74573
XR_004577921.1 lncRNA downstream 30605 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 189306 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA downstream 208042 32915540 ~ 32915973 (+) True G74676
TU88509 lncRNA downstream 316478 33023976 ~ 33024331 (+) True G74686
TU88574 lncRNA downstream 418170 33125668 ~ 33125884 (+) True G74747
XM_034303860.1 mRNA upstream 387186 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 601802 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 426857 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 429553 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 466976 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 466976 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 466976 33174474 ~ 33249659 (+) False chd8
LOC117596958 other upstream 12990 32693603 ~ 32694103 (+) True LOC117596958
XR_004577917.1 other upstream 17061 32689426 ~ 32690032 (+) False LOC117596965
TU88470 other upstream 18296 32688317 ~ 32688797 (+) True G74651
LOC117597134 other upstream 110151 32594836 ~ 32596942 (+) True LOC117597134
LOC117596941 other upstream 120427 32586071 ~ 32586666 (+) True LOC117596941
TU88479 other downstream 5675 32713173 ~ 32720432 (+) False LOC117596949
LOC117596943 other downstream 7456 32714954 ~ 32715523 (+) True LOC117596943
TU88480 other downstream 12458 32719956 ~ 32720432 (+) False LOC117596949
LOC117596949 other downstream 12466 32719964 ~ 32720464 (+) True LOC117596949
LOC117597137 other downstream 14326 32721824 ~ 32736271 (+) True LOC117597137

Expression Profile