RNA id: TU88499


Basic Information

Item Value
RNA id TU88499
length 269
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G74676
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32915540 ~ 32915973 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagtCACTTTTCACAACTCCtaaagttgtagatgaaggtgataatgttactctgtcctgcagatACACATCCAGCAGTGCTATAGCAAACAACTACCTGcactggtacagacaatatccaaaatctaaacctgagttccttctttatatttctcaacGTGGAGATCTGAGTCCCAACCCTCCCTCAAGAATGTCTGCT

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577921.1 lncRNA upstream 175429 32738103 ~ 32740111 (+) True LOC117596969
TU88477 lncRNA upstream 208042 32707093 ~ 32707498 (+) True G74655
XR_004577916.1 lncRNA upstream 225517 32689426 ~ 32690023 (+) True LOC117596965
XR_004577915.1 lncRNA upstream 381934 32532846 ~ 32533606 (+) True LOC117596964
TU88396 lncRNA upstream 575466 32318432 ~ 32340074 (+) True G74580
TU88509 lncRNA downstream 108003 33023976 ~ 33024331 (+) True G74686
TU88574 lncRNA downstream 209695 33125668 ~ 33125884 (+) True G74747
TU88585 lncRNA downstream 214070 33130043 ~ 33135759 (+) True mmp14b
TU88580 lncRNA downstream 232564 33148537 ~ 33149053 (+) True G74750
XM_034303860.1 mRNA upstream 595633 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 810249 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 218382 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 221078 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 258501 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 258501 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 258501 33174474 ~ 33249659 (+) False chd8
LOC117596944 other upstream 34175 32880711 ~ 32881365 (+) True LOC117596944
LOC117597138 other upstream 167747 32745500 ~ 32747793 (+) True LOC117597138
LOC117596925 other upstream 172403 32742471 ~ 32743137 (+) False LOC117596925
TU88484 other upstream 172570 32742265 ~ 32742970 (+) True LOC117596925
LOC117597137 other upstream 179269 32721824 ~ 32736271 (+) True LOC117597137
XR_004577922.1 other downstream 10643 32926616 ~ 32927014 (+) True LOC117596970

Expression Profile