RNA id: TU88526


Basic Information

Item Value
RNA id TU88526
length 312
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G74702
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32862207 ~ 32862659 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtaaagttcagcacatacagcactattatacagaatcctcacagagctgtgttcagaaatggctcaactatacaacttactgtacatagtgagatacacaccactgattctcactctagctacagcaggcagttttgcagataaaatttggccgacggatgaagataccaacattatcaggaaagaaacagacactgttactctgaaatgttcatatgagacAAACAGTGAATACATTTATctttactggtacaaacaatatcctaacagcgcaccacagtttttactgtataaaggtGCAAGGTCAAGAT

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05170 Human immunodeficiency virus 1 infection
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577919.1 lncRNA downstream 10832 32849927 ~ 32851375 (-) True LOC117596967
XR_004577920.1 lncRNA downstream 92925 32767588 ~ 32769282 (-) True LOC117596968
TU88464 lncRNA downstream 202246 32659532 ~ 32659961 (-) True G74647
TU88463 lncRNA downstream 209966 32651787 ~ 32652241 (-) True G74646
XR_004577912.1 lncRNA downstream 214109 32647281 ~ 32648098 (-) True LOC117596962
XR_004577918.1 lncRNA upstream 9087 32871746 ~ 32873023 (-) True LOC117596966
XR_004578073.1 lncRNA upstream 83475 32946134 ~ 32947158 (-) True LOC117597171
TU88542 lncRNA upstream 162762 33025421 ~ 33025846 (-) True G74717
TU88545 lncRNA upstream 168383 33031042 ~ 33031426 (-) True G74720
TU88554 lncRNA upstream 195301 33057960 ~ 33058362 (-) False LOC117597193
XM_034303863.1 mRNA downstream 36640 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1134655 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1317573 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1328949 31528370 ~ 31533258 (-) True psmb5
XM_034304040.1 mRNA downstream 1405684 31379473 ~ 31456523 (-) False LOC113540461
XM_034303864.1 mRNA upstream 110126 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 268428 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 268428 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 268428 33131087 ~ 33134319 (-) True c4h14orf119
XM_026912175.2 mRNA upstream 303283 33165942 ~ 33168027 (-) False cbln12
LOC117596934 other downstream 16937 32844101 ~ 32845270 (-) True LOC117596934
LOC117596924 other downstream 26485 32835039 ~ 32835722 (-) True LOC117596924
LOC113540133 other downstream 45926 32815429 ~ 32816281 (-) True LOC113540133
LOC117597139 other downstream 50472 32810432 ~ 32811735 (-) True LOC117597139
LOC117596923 other downstream 51911 32809596 ~ 32810296 (-) True LOC117596923
TU88527 other upstream 3287 32865946 ~ 32866461 (-) True G74703
TU88528 other upstream 3287 32865946 ~ 32868466 (-) False G74703
TU88533 other upstream 83522 32946181 ~ 32946800 (-) False LOC117597171
LOC117597170 other upstream 87175 32949834 ~ 32950494 (-) True LOC117597170
LOC117597177 other upstream 108345 32971004 ~ 32971513 (-) True LOC117597177

Expression Profile