RNA id: TU88527


Basic Information

Item Value
RNA id TU88527
length 352
RNA type TUCP
GC content 0.45
exon number 2
gene id G74703
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32865946 ~ 32868466 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcagctaagaccattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgatgatgttactctgtcctgcagctACAGTGGTTCAGTAAACAccctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatatttctcaacGTGGGGCTCTGAGTCTCAACCCTcccccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgcagcc

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko05323 Rheumatoid arthritis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88526 lncRNA downstream 3287 32862207 ~ 32862659 (-) True G74702
XR_004577919.1 lncRNA downstream 14571 32849927 ~ 32851375 (-) True LOC117596967
XR_004577920.1 lncRNA downstream 96664 32767588 ~ 32769282 (-) True LOC117596968
TU88464 lncRNA downstream 205985 32659532 ~ 32659961 (-) True G74647
TU88463 lncRNA downstream 213705 32651787 ~ 32652241 (-) True G74646
XR_004577918.1 lncRNA upstream 5285 32871746 ~ 32873023 (-) True LOC117596966
XR_004578073.1 lncRNA upstream 79673 32946134 ~ 32947158 (-) True LOC117597171
TU88542 lncRNA upstream 158960 33025421 ~ 33025846 (-) True G74717
TU88545 lncRNA upstream 164581 33031042 ~ 33031426 (-) True G74720
TU88554 lncRNA upstream 191499 33057960 ~ 33058362 (-) False LOC117597193
XM_034303863.1 mRNA downstream 40379 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1138394 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1321312 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1332688 31528370 ~ 31533258 (-) True psmb5
XM_034304040.1 mRNA downstream 1409423 31379473 ~ 31456523 (-) False LOC113540461
XM_034303864.1 mRNA upstream 106324 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 264626 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 264626 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 264626 33131087 ~ 33134319 (-) True c4h14orf119
XM_026912175.2 mRNA upstream 299481 33165942 ~ 33168027 (-) False cbln12
LOC117596934 other downstream 20676 32844101 ~ 32845270 (-) True LOC117596934
LOC117596924 other downstream 30224 32835039 ~ 32835722 (-) True LOC117596924
LOC113540133 other downstream 49665 32815429 ~ 32816281 (-) True LOC113540133
LOC117597139 other downstream 54211 32810432 ~ 32811735 (-) True LOC117597139
LOC117596923 other downstream 55650 32809596 ~ 32810296 (-) True LOC117596923
TU88533 other upstream 79720 32946181 ~ 32946800 (-) False LOC117597171
LOC117597170 other upstream 83373 32949834 ~ 32950494 (-) True LOC117597170
LOC117597177 other upstream 104543 32971004 ~ 32971513 (-) True LOC117597177
LOC117597142 other upstream 129895 32996356 ~ 32996892 (-) True LOC117597142
LOC117597007 other upstream 166557 33033018 ~ 33033661 (-) True LOC117597007

Expression Profile