RNA id: TU88533


Basic Information

Item Value
RNA id TU88533
length 472
RNA type TUCP
GC content 0.43
exon number 2
gene id LOC117597171
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32946134 ~ 32947158 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAGATACTGCCGTTTATATCTACTGCAAGAGAGACACTCACAACAATCATGTTactcttctttgttttcataGCTGTTAAAAACATTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTGACTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGGATTTTTATATCTACAGGTGATGTCAGTAAAGCTGAACAACTTGACCCAAGACTATCCATCAGACTCCGTAAAAATGAGAGGAAAGTAGATCTGGAGATCTTTCCTGCTTCAGTATCAGACTCTTCACTGTACTACTGCGCCATggagcccacagtgacaggaaacacaactacactgtacaaaaactccttcacatcacaaaagggaggtttttctttttctcagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577918.1 lncRNA downstream 73158 32871746 ~ 32873023 (-) True LOC117596966
TU88526 lncRNA downstream 83522 32862207 ~ 32862659 (-) True G74702
XR_004577919.1 lncRNA downstream 94806 32849927 ~ 32851375 (-) True LOC117596967
XR_004577920.1 lncRNA downstream 176899 32767588 ~ 32769282 (-) True LOC117596968
TU88464 lncRNA downstream 286220 32659532 ~ 32659961 (-) True G74647
TU88542 lncRNA upstream 78621 33025421 ~ 33025846 (-) True G74717
TU88545 lncRNA upstream 84242 33031042 ~ 33031426 (-) True G74720
TU88554 lncRNA upstream 111160 33057960 ~ 33058362 (-) False LOC117597193
TU88557 lncRNA upstream 135739 33082539 ~ 33082974 (-) False LOC117597189
TU88558 lncRNA upstream 137598 33084398 ~ 33084836 (-) True G74731
XM_034303863.1 mRNA downstream 120614 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1218629 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1401547 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1412923 31528370 ~ 31533258 (-) True psmb5
XM_034304040.1 mRNA downstream 1489658 31379473 ~ 31456523 (-) False LOC113540461
XM_034303864.1 mRNA upstream 25985 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 184287 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 184287 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 184287 33131087 ~ 33134319 (-) True c4h14orf119
XM_026912175.2 mRNA upstream 219142 33165942 ~ 33168027 (-) False cbln12
TU88528 other downstream 77715 32865946 ~ 32868466 (-) False G74703
TU88527 other downstream 79720 32865946 ~ 32866461 (-) True G74703
LOC117596934 other downstream 100911 32844101 ~ 32845270 (-) True LOC117596934
LOC117596924 other downstream 110459 32835039 ~ 32835722 (-) True LOC117596924
LOC113540133 other downstream 129900 32815429 ~ 32816281 (-) True LOC113540133
LOC117597170 other upstream 3034 32949834 ~ 32950494 (-) True LOC117597170
LOC117597177 other upstream 24204 32971004 ~ 32971513 (-) True LOC117597177
LOC117597142 other upstream 49556 32996356 ~ 32996892 (-) True LOC117597142
LOC117597007 other upstream 86218 33033018 ~ 33033661 (-) True LOC117597007
TU88550 other upstream 88103 33034903 ~ 33042101 (-) True LOC117597009

Expression Profile