RNA id: XR_004578073.1


Basic Information

Item Value
RNA id XR_004578073.1
length 632
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC117597171
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32946134 ~ 32947158 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTGCTCCACGGAGTTTCCTTAAAATCAGacagtttcctccaggttctctggtttcctcccacctcccattaacatgcagGATCCTGCAGCTGATCCAGTTGAGCTGGAATGAGGCAAGTCTTCTGGGGTTGTGGAAAGCCAGAGCACTTGACTACGCCTAAGTAAAAGTGGGAGGAGCTAGATGTGCTGTTAAAAACATTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTGACTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGGATTTTTATATCTACAGGTGATGTCAGTAAAGCTGAACAACTTGACCCAAGACTATCCATCAGACTCCGTAAAAATGAGAGGAAAGTAGATCTGGAGATCTTTCCTGCTTCAGTATCAGACTCTTCACTGTACTACTGCGCCATggagcccacagtgacaggaaacacaactacactgtacaaaaactccttcacatcacaaaagggaggtttttctttttctcaggagGGGGAGCTGTTTGGCTTTTTGATTCAAATAAATTTTCCTTTTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577918.1 lncRNA downstream 73111 32871746 ~ 32873023 (-) True LOC117596966
TU88526 lncRNA downstream 83475 32862207 ~ 32862659 (-) True G74702
XR_004577919.1 lncRNA downstream 94759 32849927 ~ 32851375 (-) True LOC117596967
XR_004577920.1 lncRNA downstream 176852 32767588 ~ 32769282 (-) True LOC117596968
TU88464 lncRNA downstream 286173 32659532 ~ 32659961 (-) True G74647
TU88542 lncRNA upstream 78263 33025421 ~ 33025846 (-) True G74717
TU88545 lncRNA upstream 83884 33031042 ~ 33031426 (-) True G74720
TU88554 lncRNA upstream 110802 33057960 ~ 33058362 (-) False LOC117597193
TU88557 lncRNA upstream 135381 33082539 ~ 33082974 (-) False LOC117597189
TU88558 lncRNA upstream 137240 33084398 ~ 33084836 (-) True G74731
XM_034303863.1 mRNA downstream 120567 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1218582 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1401500 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1412876 31528370 ~ 31533258 (-) True psmb5
XM_034304040.1 mRNA downstream 1489611 31379473 ~ 31456523 (-) False LOC113540461
XM_034303864.1 mRNA upstream 25627 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 183929 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 183929 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 183929 33131087 ~ 33134319 (-) True c4h14orf119
XM_026912175.2 mRNA upstream 218784 33165942 ~ 33168027 (-) False cbln12
TU88528 other downstream 77668 32865946 ~ 32868466 (-) False G74703
TU88527 other downstream 79673 32865946 ~ 32866461 (-) True G74703
LOC117596934 other downstream 100864 32844101 ~ 32845270 (-) True LOC117596934
LOC117596924 other downstream 110412 32835039 ~ 32835722 (-) True LOC117596924
LOC113540133 other downstream 129853 32815429 ~ 32816281 (-) True LOC113540133
LOC117597170 other upstream 2676 32949834 ~ 32950494 (-) True LOC117597170
LOC117597177 other upstream 23846 32971004 ~ 32971513 (-) True LOC117597177
LOC117597142 other upstream 49198 32996356 ~ 32996892 (-) True LOC117597142
LOC117597007 other upstream 85860 33033018 ~ 33033661 (-) True LOC117597007
TU88550 other upstream 87745 33034903 ~ 33042101 (-) True LOC117597009

Expression Profile