RNA id: TU88545


Basic Information

Item Value
RNA id TU88545
length 240
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G74720
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33031042 ~ 33031426 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acttactgtacatagtgagatacacaccactgattctcactctagctacagcaggcagttttgcagataaaattgggccgacggatgaagataccaacattatcagcaaagaaacagacactgttactctgaaatgttcatatgagacAAGCAGTAACATCCGgctttactggtacaaacaatatcctaacagcgcaccacagtttttactgtatgtTGGTGGCACTCCCAGTGATCCTC

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88542 lncRNA downstream 5196 33025421 ~ 33025846 (-) True G74717
XR_004578073.1 lncRNA downstream 83884 32946134 ~ 32947158 (-) True LOC117597171
XR_004577918.1 lncRNA downstream 158019 32871746 ~ 32873023 (-) True LOC117596966
TU88526 lncRNA downstream 168383 32862207 ~ 32862659 (-) True G74702
XR_004577919.1 lncRNA downstream 179667 32849927 ~ 32851375 (-) True LOC117596967
TU88554 lncRNA upstream 26534 33057960 ~ 33058362 (-) False LOC117597193
TU88557 lncRNA upstream 51113 33082539 ~ 33082974 (-) False LOC117597189
TU88558 lncRNA upstream 52972 33084398 ~ 33084836 (-) True G74731
XR_004577944.1 lncRNA upstream 58780 33090206 ~ 33091128 (-) True LOC117596990
TU88563 lncRNA upstream 76703 33108129 ~ 33108638 (-) True G74736
XM_034303864.1 mRNA downstream 53342 32972785 ~ 32977700 (-) True LOC117597141
XM_034303863.1 mRNA downstream 205475 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1303490 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1486408 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1497784 31528370 ~ 31533258 (-) True psmb5
XM_026912180.2 mRNA upstream 99661 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 99661 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 99661 33131087 ~ 33134319 (-) True c4h14orf119
XM_026912175.2 mRNA upstream 134516 33165942 ~ 33168027 (-) False cbln12
XM_026912176.2 mRNA upstream 134516 33165942 ~ 33168020 (-) True cbln12
LOC117597142 other downstream 34150 32996356 ~ 32996892 (-) True LOC117597142
LOC117597177 other downstream 59529 32971004 ~ 32971513 (-) True LOC117597177
LOC117597170 other downstream 80548 32949834 ~ 32950494 (-) True LOC117597170
TU88533 other downstream 84242 32946181 ~ 32946800 (-) False LOC117597171
TU88528 other downstream 162576 32865946 ~ 32868466 (-) False G74703
LOC117597007 other upstream 1592 33033018 ~ 33033661 (-) True LOC117597007
TU88550 other upstream 3477 33034903 ~ 33042101 (-) True LOC117597009
LOC117597009 other upstream 3478 33034904 ~ 33035413 (-) False LOC117597009
LOC117597008 other upstream 5635 33037061 ~ 33037706 (-) True LOC117597008
LOC117597193 other upstream 26072 33057498 ~ 33058351 (-) True LOC117597193

Expression Profile