RNA id: TU88563


Basic Information

Item Value
RNA id TU88563
length 510
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G74736
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33108129 ~ 33108638 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caccagctcacagtgcagcagctgcaaaggaaacagaaacaaagagacagagacaagcaacactgcatgcagaaccacaccagttaagaaagcacattacctgcctgaaatgtaaatgatttcaaatgacATGTACATGTTATATCTACCTCCATCCATGTGgtatttcagtaactacagGGAATGGAGAAGTATTATGGCCCTGTAAAATGCCTTCAGGAGGCAGTAAATATGCTCAGAGCTCATTTACTCTTCATCTCAAGTGACATGTAAAACAACATCAGTGAAATCTACAATATTTACAGGGTCATAACATGAATTAAAGAGACCAGACaccagatttattgtttttatgcccatatattaagaaatgtaaacagaaacataATATGCTTTGGGGTGAGTAACAgcacaataataaactaaaacattACTATAATGTCTCCATCTGAGCTTTTGTGAGGTGTACTTATGGTATCTACTTCTTAGCCCCATTCCAATACAGCTTAT

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577944.1 lncRNA downstream 17001 33090206 ~ 33091128 (-) True LOC117596990
TU88558 lncRNA downstream 23293 33084398 ~ 33084836 (-) True G74731
TU88557 lncRNA downstream 25155 33082539 ~ 33082974 (-) False LOC117597189
TU88554 lncRNA downstream 49767 33057960 ~ 33058362 (-) False LOC117597193
TU88545 lncRNA downstream 76703 33031042 ~ 33031426 (-) True G74720
TU88564 lncRNA upstream 6106 33114744 ~ 33114997 (-) True G74737
TU88571 lncRNA upstream 13954 33122592 ~ 33122959 (-) True G74744
TU88575 lncRNA upstream 17029 33125667 ~ 33125874 (-) True G74748
XM_034303864.1 mRNA downstream 130429 32972785 ~ 32977700 (-) True LOC117597141
XM_034303863.1 mRNA downstream 282562 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1380577 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1563495 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1574871 31528370 ~ 31533258 (-) True psmb5
XM_026912180.2 mRNA upstream 22449 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 22449 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 22449 33131087 ~ 33134319 (-) True c4h14orf119
XM_026912175.2 mRNA upstream 57304 33165942 ~ 33168027 (-) False cbln12
XM_026912176.2 mRNA upstream 57304 33165942 ~ 33168020 (-) True cbln12
LOC117597204 other downstream 6489 33101134 ~ 33101640 (-) True LOC117597204
LOC117597195 other downstream 8641 33098751 ~ 33099488 (-) True LOC117597195
XR_004577945.1 other downstream 17001 33090206 ~ 33091128 (-) False LOC117596990
LOC117597189 other downstream 24807 33082197 ~ 33083322 (-) True LOC117597189
LOC117597193 other downstream 49778 33057498 ~ 33058351 (-) True LOC117597193
LOC117597199 other upstream 1180 33109818 ~ 33110318 (-) True LOC117597199
LOC117597144 other upstream 12154 33120792 ~ 33125120 (-) False LOC117597144
TU88570 other upstream 12461 33121099 ~ 33121407 (-) False LOC117597144
TU88573 other upstream 15995 33124633 ~ 33125144 (-) True LOC117597144

Expression Profile