RNA id: TU88571



Basic Information


Item Value
RNA id TU88571
length 223
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G74744
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33122592 ~ 33122959 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


cctcacagagctgtgttcagaaatggctcaactatacaacttactgtacatagtgagatacacaccactgattctcactctagctacagcaggcagttttgcagataaaattgggccgaaggatgaagataccaacattatcaggaaagaaacagacactgttactctgaaatgttcatatgagtcAAGCAGCAATAACATTTGgctttactggtacaaacaa

Function


GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05332 Graft-versus-host disease

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU88564 lncRNA downstream 7595 33114744 ~ 33114997 (-) True G74737
TU88563 lncRNA downstream 13954 33108129 ~ 33108638 (-) True G74736
XR_004577944.1 lncRNA downstream 31464 33090206 ~ 33091128 (-) True LOC117596990
TU88558 lncRNA downstream 37756 33084398 ~ 33084836 (-) True G74731
TU88557 lncRNA downstream 39618 33082539 ~ 33082974 (-) False LOC117597189
TU88575 lncRNA upstream 2708 33125667 ~ 33125874 (-) True G74748
XM_034303864.1 mRNA downstream 144892 32972785 ~ 32977700 (-) True LOC117597141
XM_034303863.1 mRNA downstream 297025 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1395040 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1577958 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1589334 31528370 ~ 31533258 (-) True psmb5
XM_026912180.2 mRNA upstream 8128 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 8128 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 8128 33131087 ~ 33134319 (-) True c4h14orf119
XM_026912175.2 mRNA upstream 42983 33165942 ~ 33168027 (-) False cbln12
XM_026912176.2 mRNA upstream 42983 33165942 ~ 33168020 (-) True cbln12
TU88570 other downstream 1185 33121099 ~ 33121407 (-) False LOC117597144
LOC117597199 other downstream 12274 33109818 ~ 33110318 (-) True LOC117597199
LOC117597204 other downstream 20952 33101134 ~ 33101640 (-) True LOC117597204
LOC117597195 other downstream 23104 33098751 ~ 33099488 (-) True LOC117597195
XR_004577945.1 other downstream 31464 33090206 ~ 33091128 (-) False LOC117596990
TU88573 other upstream 1674 33124633 ~ 33125144 (-) True LOC117597144

Expression Profile