RNA id: TU88574


Basic Information

Item Value
RNA id TU88574
length 217
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G74747
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33125668 ~ 33125884 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaggctcactgatgcgtgtggggagtgaaggtccgtctggtccaatcccacagaagagctactgtagcacaaactgctgaaaaagttaaagctgctctgatagaaaggagtcagaacacacagtgcagtgcagcttgctgcgtatggagctgcgtagctgcagagcggtcagagagcccatgctgaccctgtccaccacccaaagctcctacaatg

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG:

id description
ko00760 Nicotinate and nicotinamide metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88509 lncRNA upstream 101337 33023976 ~ 33024331 (+) True G74686
TU88495 lncRNA upstream 200933 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA upstream 209695 32915540 ~ 32915973 (+) True G74676
XR_004577921.1 lncRNA upstream 385557 32738103 ~ 32740111 (+) True LOC117596969
TU88477 lncRNA upstream 418170 32707093 ~ 32707498 (+) True G74655
TU88585 lncRNA downstream 4159 33130043 ~ 33135759 (+) True mmp14b
TU88580 lncRNA downstream 22653 33148537 ~ 33149053 (+) True G74750
XM_034303860.1 mRNA upstream 805761 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 1020377 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 8471 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 11167 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 48590 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 48590 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 48590 33174474 ~ 33249659 (+) False chd8
XR_004577922.1 other upstream 198654 32926616 ~ 32927014 (+) True LOC117596970
LOC117596944 other upstream 244303 32880711 ~ 32881365 (+) True LOC117596944
LOC117597138 other upstream 377875 32745500 ~ 32747793 (+) True LOC117597138
LOC117596925 other upstream 382531 32742471 ~ 32743137 (+) False LOC117596925
TU88484 other upstream 382698 32742265 ~ 32742970 (+) True LOC117596925

Expression Profile