Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU88580 |
| length | 517 |
| lncRNA type | inter_gene |
| GC content | 0.32 |
| exon number | 1 |
| gene id | G74750 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 33148537 ~ 33149053 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0061448 | connective tissue development | biological_process |
| GO:0001501 | skeletal system development | biological_process |
| GO:0009888 | tissue development | biological_process |
| GO:0051216 | cartilage development | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU88585 | lncRNA | upstream | 12778 | 33130043 ~ 33135759 (+) | True | mmp14b |
| TU88574 | lncRNA | upstream | 22653 | 33125668 ~ 33125884 (+) | True | G74747 |
| TU88509 | lncRNA | upstream | 124206 | 33023976 ~ 33024331 (+) | True | G74686 |
| TU88495 | lncRNA | upstream | 223802 | 32896804 ~ 32924735 (+) | True | G74672 |
| TU88499 | lncRNA | upstream | 232564 | 32915540 ~ 32915973 (+) | True | G74676 |
| XM_034303675.1 | mRNA | upstream | 106 | 33134355 ~ 33148431 (+) | False | mmp14b |
| XM_026912173.2 | mRNA | upstream | 106 | 33137051 ~ 33148431 (+) | False | mmp14b |
| XM_034303860.1 | mRNA | upstream | 828630 | 32316988 ~ 32319907 (+) | True | LOC117597128 |
| XM_026936383.2 | mRNA | upstream | 1043246 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
| XM_034304145.1 | mRNA | downstream | 25421 | 33174474 ~ 33249659 (+) | True | chd8 |
| XM_034304147.1 | mRNA | downstream | 25421 | 33174474 ~ 33249659 (+) | False | chd8 |
| XM_034304146.1 | mRNA | downstream | 25421 | 33174474 ~ 33249659 (+) | False | chd8 |
| XM_026944648.2 | mRNA | downstream | 108176 | 33257229 ~ 33259292 (+) | True | gpr25 |
| XR_004577922.1 | other | upstream | 221523 | 32926616 ~ 32927014 (+) | True | LOC117596970 |
| LOC117596944 | other | upstream | 267172 | 32880711 ~ 32881365 (+) | True | LOC117596944 |
| LOC117597138 | other | upstream | 400744 | 32745500 ~ 32747793 (+) | True | LOC117597138 |
| LOC117596925 | other | upstream | 405400 | 32742471 ~ 32743137 (+) | False | LOC117596925 |
| TU88484 | other | upstream | 405567 | 32742265 ~ 32742970 (+) | True | LOC117596925 |
