RNA id: XM_026912173.2


Basic Information

Item Value
RNA id XM_026912173.2
length 4530
RNA type mRNA
GC content 0.43
exon number 10
gene id mmp14b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33130043 ~ 33148431 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGCTAGTCTGGGAAAGCTGAGCACTTGGAGCAGTTTGGTCTCATCCACGTCAACAGCTGGGAGGAAACCGAGACCAGCAGCATTACAGCATTAACCGGCTGGAGAAAAGCTTCTGGAGGAAATCAGTCAGATCTGAGATCCAGTCTTCACTGCCATCGGCTTTCTTTTTGCCTCTTAATATTTTGAGAgagaaataattacatttagcCCTAAACCACAACTTCCTTCAGCCTGGTCCTAGTTAAAGCTGCGTGTCTGGAGTTTAAAGGAGTGTTTCTGATCAGTGCTCCGGtggggtttgtttgttttttcgcGAGGCGATGTTTAACAGTTagaagtaaagtaaagtaaaggaaagtaggaaaaggaaaggaaagtaAAGCGGAGTCTGTGGATTAGTTAGAGATTCTCGGCAGAATGTGGCTTTGTGCTGCTGCGCTGccggagctgctgctgctgctgctgctgcccccGCGGCTGAGCGCTCAGGCCCCGGCCGCAGAGCCGCGCCTCAACCCGGAGGCGTGGCTCCAACAGTATGGGTACCTTCCTCCAGGTGATCTCCATATACAAGCACCCCGTTCACCTCAATCCATTTCCTCTGCTATTACTGCAATGCAAAGGTTCTATGGCCTGACTGTCACGGGAAAATTGGACCCTAACACACTGAAGGCAATGAGGAGGCCTCGCTGTGGTGTTCCAGATAAGTTTGGAGCAGAGCTTAAGAGCAACTTGAGAAAGAAAAGATATGCTATCCAGGGACTGAAATGGGAAAAGAAGGAGATCACATTCTGCATACAGAACTACACGCCTAAGATTGGGGAGTATGAGACCTATGAGGCGATCAGAAAAGCTTTCAAAGTGTGGGAGAGTGTCACCCCTTTACGATTTCGAGAGATCCCTTACAGTTACATTAGGCACAAGACTACTGACTTTGCGGATATTATGATCTTCTTTGCTGAGGGTTTTCATGATGATGCCAGTCCATTTGATGGCGAGGGTGGGTTCTTAGCACATGCCTACTTTCCTGGAAATGGCATAGGAGGAGACACGCACTTTGACGCTGCAGAGCCCTGGACAATTGGAAACCGAGACTTGTGGGGTAATGATGTTTTCCTGGTGGCTGTGCATGAGCTGGGTCATGCATTGGGTATGGAGCACTCAAATGACCCCTCCGCCATCATGGCACCTTTCTACCAATGGATGGACACAGAAAACTTTGAGCTTCCGGAGGATGATCATCGTGGCATTCAGCAGCTTTATGGACCCAACCCTAGTGGCCATCCTCGACCCTCGGTTAGCCCCCGCACCCCTTACCGTATCCCTCATCCCTCTGACACTCCACGCAAGCCAGAAGTACCTCACTTTGGCCCTGATATCTGTGAAGGTCACTTTGACACCATTGCTATTCTGAGAGGAGAAATGTTTATCTTCAAGAATAAATGGTTGTGGCGTCTTCGCAATCACCGGGTTATGGAAAATTATCCAATGCCAATCGGACATGTCTGGAGAGGTCTACCTACGTCAATTGATGCTGCCTACGAGAGAGAGGATGGCAAATTTGTCTTTTTCAAAGGTAACCGACATTGGGTATTCAGTGAAGCAAATCTGGAGCCAGGCTACCCAAAGACACTGAGAGCGATGGGCAGAGGCCTCCCTCAGGACAGAATTGATGCTGCCCTTTTCTACACACCTACGGGCAACACCTACTTCTTCAGAGGAAATAAATATTATCGATATAATGAAGAGCGGCAATCAGTGGACCCGGACTACCCTAAACCCAGTAGCAAGTGGCAGGGCGTCCCTGATGACATCAAAGCAGCTTTCATGAGCCGAGACCAAAGTTTCACGTATTTCTACAAAGCCAATAAATACTGGAAGTTCAACAACCAGCTGATGAGAGTGGAGCCTGGTTACCCCAAGTTTGCCCTAAGTGATTGGGTCGGCTGTCCAGATGAGGACACTAACACAGGTGGAGGTCGAACAGGTGGTGGAACCGATGACCGTAACCAGGACAAAGagaataaagaagaagaagaaaaattggACAAGACGGAAGTCATCGTCATTGAGGTGGACAACGCTCCTGGTGATGGAAGTGGAATGGCAGCAGTCGCGGTGCCGCTCATGCTGCTGGTGTGTTTAATTTGCACTCTGGCAGCCTTGATCTTTTTCCGCAAGTATGGCACTCCACGTCATCTTCTCTACTGTCAGCGTTCCCTACTAGACAAGGTGTAGAGGGgtgaagaggagaggaggatgaagatAAAGGTACAGGTACAGGAAGTAtggtatatattatattatttccaTACTTTGAAGTTGTTAACCTTAGTTTtgcaaaatatgaataataaaaagcaGTTGAGATATTTTTCTGCATATAAAAACTTATATAGACGTTAGACCATCTTGTCTCTGGCCACAAGAACCTTCCCACTTAAAACCTTATGTAGACGTATGGTAGAGTGCTAGTATGGCTGGCCTGAGAGCACAGAGCAGTGCACGGTCGTTAAGACAGTCCAAGCTGCCCTGAGTTACATGCACAGAAGGGTATTAAGAGTGAAGCGAATGTGCAGGGATGTTTCCGCAACCACAGAGCAGTGAGACAAACCATTAGAAAttataaaaagtctaaaaagtgAAGTtccacttcatcagggggaaagtCCACaagtcaggctttttttttttttttttttaaacttgtgttTGCGCTATATAATAAGTTAATATATGAAAGTCTCTGCCATCTTGGGAATTCTTCTACGAATCAGAACAAGTTCTGCGTTGCCAGAATAAAAGTGATTTTACACTAATCATTGTAACTGTGTGTGACCGTTCCTGTAAGTGGACATTCCCTTTTGTCCCCACCCCAAAGTCTCAAAAAATCAACTTTACTTTTGAGGAAAGTGTAGAACGACTGAGGGAAAATGAAGAGTGCATGTGTCGATGCTTAGAGATGTTCTCACATACGAAACCTCTCTGCATGTGTCACTGCTTCATGCTTCTGAAACTTTCTTTGCATGTAACGCACGGCACCTTGTGCTCTCTAACAGCCATGCTCGGATATATGCAGTGTGGGGTCAGGTTGTTCATTCTCAAAACGATCtagtaaataaattgtttaattgtaATGCTGTGGACACAAGAAAAAACAATCTGATATAAATTACTAGATTTGATATCcctaattaattattttcattacttATAAAGGAGTTATTTTGTAGTGGAAAAATCATTTCAATCGTTTTCTATTTagaatcattttcagtaaaagTGCTCTACAAATTCCTAATAACCAAAAGCAGATGTACAATACAATAGATGTCTTAGATAGACAGCATGTCTTAAAACATTCCAGATTATTAATTCTATATAATTGGACAATATGGCACCATTTTCTCccattgtgtgtttttgaagcTGTTTTTGCGTCGAAACGCAAAGTGACCATCTTGCAAAAACTGGAGCCAGAGTCTGCACAGCAGAAACCCTGGAGCCAGAGCATGAGCAGTAGATATGGCCGGACAGGCAGTGGGTCCGCGTACACACGCGCACGTCCTCAATAAATTACCCAAAGTGCAACTTAAAATGGTGCATCAGCTAACTCGAAGTGGCAAGTACAGCGCTAGTGATAAATGTCAAATGCTAAACGAAAATATCTCCGAGCTTTGAATCATGACTGACTGACCTagcatttgctagctagctaacagtatCCATCATCAAAGTAATATAAGTAGTGAATGTAAGATAGCAACTAAAATGTACTGTtaaacagcagtcaacatttacactcaacacatttttaaagaaaaaatcgCTGTTCTGTGATTTCATCTAGCTCTAACCATCGGAATGAAGGAGTGCTGTTGGATCCTCGGCTCGTTTTGTCTGTGCAGTTCGTTTAAGGAGGACTGACTGGCTAATGTTAAGATATTCTGAGGTCATACggtcaataaatcaataaatttaaatagtgtTAGCTGCCTTGTTTGTGCCATTCCTGTAATATCAGTACCACGAGCTAGCTTAGACAGCACAATGAGTAACATACTGGAAAGACTGCAGAGAGCTTCCACCATACTgaaccctgtgaatgagccgttactgtagaaacgataacgtattagcctatcattcatgttatacacacacacacacacacacacacacacacagacagacttgCGCCCAACCGTAAACTCCACACTGCGGTTTTTGTGGGAATTTGCCTGAAACTATTTTTAAACCAGTATTATTTTCTgacattgaaaaataaaatatggataAATTGTGATtatgataaacattttatgaTCGCTGATTAATCAGTTTATCATAAtcataaaatgtttatcataGATGTATTACACAGACATGTTtgttaattaatgtaatgtgtttgtCAGGCACAAAACTTTGTTTACTGCCTAAATAAAACCACTCAAATTTTAGACGTTTCTGTATATTCTAATAAATGGGCTGAAAATTTGTTTTatgatcatattttttttctttca

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0051216 cartilage development biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0006508 proteolysis biological_process
GO:0030010 establishment of cell polarity biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88585 lncRNA upstream 1292 33130043 ~ 33135759 (+) True mmp14b
TU88574 lncRNA upstream 11167 33125668 ~ 33125884 (+) True G74747
TU88509 lncRNA upstream 112720 33023976 ~ 33024331 (+) True G74686
TU88495 lncRNA upstream 212316 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA upstream 221078 32915540 ~ 32915973 (+) True G74676
TU88580 lncRNA downstream 106 33148537 ~ 33149053 (+) True G74750
XM_034303860.1 mRNA upstream 817144 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 1031760 32081919 ~ 32105291 (+) False LOC113540131
XM_034304145.1 mRNA downstream 26043 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 26043 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 26043 33174474 ~ 33249659 (+) False chd8
XM_026944648.2 mRNA downstream 108798 33257229 ~ 33259292 (+) True gpr25
XR_004577922.1 other upstream 210037 32926616 ~ 32927014 (+) True LOC117596970
LOC117596944 other upstream 255686 32880711 ~ 32881365 (+) True LOC117596944
LOC117597138 other upstream 389258 32745500 ~ 32747793 (+) True LOC117597138
LOC117596925 other upstream 393914 32742471 ~ 32743137 (+) False LOC117596925
TU88484 other upstream 394081 32742265 ~ 32742970 (+) True LOC117596925

Expression Profile