RNA id: XM_034303675.1


Basic Information

Item Value
RNA id XM_034303675.1
length 4242
RNA type mRNA
GC content 0.42
exon number 10
gene id mmp14b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33130043 ~ 33148431 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGATTTCTGATTTTTGGGATTCTACAGACAGCTAGATACAACTTCAAGTGATGAAGAGGTagaagaaagagagcaagaacCAGATACAGAAAAGGACAAAAGAGAGCTAGAAGGAGGTAAAGAGGTAGAAGAAATGCTGCATGGAGTGAGTGAAGAAATGGAAGACAGAGGGCTAAGGGAAGACGAGAGCTCAGAGGAGCTTCACAGCTAAAGTCACCAGTACAGCTTCCAAGGCGTGGCTCCAACAGTATGGGTACCTTCCTCCAGGTGATCTCCATATACAAGCACCCCGTTCACCTCAATCCATTTCCTCTGCTATTACTGCAATGCAAAGGTTCTATGGCCTGACTGTCACGGGAAAATTGGACCCTAACACACTGAAGGCAATGAGGAGGCCTCGCTGTGGTGTTCCAGATAAGTTTGGAGCAGAGCTTAAGAGCAACTTGAGAAAGAAAAGATATGCTATCCAGGGACTGAAATGGGAAAAGAAGGAGATCACATTCTGCATACAGAACTACACGCCTAAGATTGGGGAGTATGAGACCTATGAGGCGATCAGAAAAGCTTTCAAAGTGTGGGAGAGTGTCACCCCTTTACGATTTCGAGAGATCCCTTACAGTTACATTAGGCACAAGACTACTGACTTTGCGGATATTATGATCTTCTTTGCTGAGGGTTTTCATGATGATGCCAGTCCATTTGATGGCGAGGGTGGGTTCTTAGCACATGCCTACTTTCCTGGAAATGGCATAGGAGGAGACACGCACTTTGACGCTGCAGAGCCCTGGACAATTGGAAACCGAGACTTGTGGGGTAATGATGTTTTCCTGGTGGCTGTGCATGAGCTGGGTCATGCATTGGGTATGGAGCACTCAAATGACCCCTCCGCCATCATGGCACCTTTCTACCAATGGATGGACACAGAAAACTTTGAGCTTCCGGAGGATGATCATCGTGGCATTCAGCAGCTTTATGGACCCAACCCTAGTGGCCATCCTCGACCCTCGGTTAGCCCCCGCACCCCTTACCGTATCCCTCATCCCTCTGACACTCCACGCAAGCCAGAAGTACCTCACTTTGGCCCTGATATCTGTGAAGGTCACTTTGACACCATTGCTATTCTGAGAGGAGAAATGTTTATCTTCAAGAATAAATGGTTGTGGCGTCTTCGCAATCACCGGGTTATGGAAAATTATCCAATGCCAATCGGACATGTCTGGAGAGGTCTACCTACGTCAATTGATGCTGCCTACGAGAGAGAGGATGGCAAATTTGTCTTTTTCAAAGGTAACCGACATTGGGTATTCAGTGAAGCAAATCTGGAGCCAGGCTACCCAAAGACACTGAGAGCGATGGGCAGAGGCCTCCCTCAGGACAGAATTGATGCTGCCCTTTTCTACACACCTACGGGCAACACCTACTTCTTCAGAGGAAATAAATATTATCGATATAATGAAGAGCGGCAATCAGTGGACCCGGACTACCCTAAACCCAGTAGCAAGTGGCAGGGCGTCCCTGATGACATCAAAGCAGCTTTCATGAGCCGAGACCAAAGTTTCACGTATTTCTACAAAGCCAATAAATACTGGAAGTTCAACAACCAGCTGATGAGAGTGGAGCCTGGTTACCCCAAGTTTGCCCTAAGTGATTGGGTCGGCTGTCCAGATGAGGACACTAACACAGGTGGAGGTCGAACAGGTGGTGGAACCGATGACCGTAACCAGGACAAAGagaataaagaagaagaagaaaaattggACAAGACGGAAGTCATCGTCATTGAGGTGGACAACGCTCCTGGTGATGGAAGTGGAATGGCAGCAGTCGCGGTGCCGCTCATGCTGCTGGTGTGTTTAATTTGCACTCTGGCAGCCTTGATCTTTTTCCGCAAGTATGGCACTCCACGTCATCTTCTCTACTGTCAGCGTTCCCTACTAGACAAGGTGTAGAGGGgtgaagaggagaggaggatgaagatAAAGGTACAGGTACAGGAAGTAtggtatatattatattatttccaTACTTTGAAGTTGTTAACCTTAGTTTtgcaaaatatgaataataaaaagcaGTTGAGATATTTTTCTGCATATAAAAACTTATATAGACGTTAGACCATCTTGTCTCTGGCCACAAGAACCTTCCCACTTAAAACCTTATGTAGACGTATGGTAGAGTGCTAGTATGGCTGGCCTGAGAGCACAGAGCAGTGCACGGTCGTTAAGACAGTCCAAGCTGCCCTGAGTTACATGCACAGAAGGGTATTAAGAGTGAAGCGAATGTGCAGGGATGTTTCCGCAACCACAGAGCAGTGAGACAAACCATTAGAAAttataaaaagtctaaaaagtgAAGTtccacttcatcagggggaaagtCCACaagtcaggctttttttttttttttttttaaacttgtgttTGCGCTATATAATAAGTTAATATATGAAAGTCTCTGCCATCTTGGGAATTCTTCTACGAATCAGAACAAGTTCTGCGTTGCCAGAATAAAAGTGATTTTACACTAATCATTGTAACTGTGTGTGACCGTTCCTGTAAGTGGACATTCCCTTTTGTCCCCACCCCAAAGTCTCAAAAAATCAACTTTACTTTTGAGGAAAGTGTAGAACGACTGAGGGAAAATGAAGAGTGCATGTGTCGATGCTTAGAGATGTTCTCACATACGAAACCTCTCTGCATGTGTCACTGCTTCATGCTTCTGAAACTTTCTTTGCATGTAACGCACGGCACCTTGTGCTCTCTAACAGCCATGCTCGGATATATGCAGTGTGGGGTCAGGTTGTTCATTCTCAAAACGATCtagtaaataaattgtttaattgtaATGCTGTGGACACAAGAAAAAACAATCTGATATAAATTACTAGATTTGATATCcctaattaattattttcattacttATAAAGGAGTTATTTTGTAGTGGAAAAATCATTTCAATCGTTTTCTATTTagaatcattttcagtaaaagTGCTCTACAAATTCCTAATAACCAAAAGCAGATGTACAATACAATAGATGTCTTAGATAGACAGCATGTCTTAAAACATTCCAGATTATTAATTCTATATAATTGGACAATATGGCACCATTTTCTCccattgtgtgtttttgaagcTGTTTTTGCGTCGAAACGCAAAGTGACCATCTTGCAAAAACTGGAGCCAGAGTCTGCACAGCAGAAACCCTGGAGCCAGAGCATGAGCAGTAGATATGGCCGGACAGGCAGTGGGTCCGCGTACACACGCGCACGTCCTCAATAAATTACCCAAAGTGCAACTTAAAATGGTGCATCAGCTAACTCGAAGTGGCAAGTACAGCGCTAGTGATAAATGTCAAATGCTAAACGAAAATATCTCCGAGCTTTGAATCATGACTGACTGACCTagcatttgctagctagctaacagtatCCATCATCAAAGTAATATAAGTAGTGAATGTAAGATAGCAACTAAAATGTACTGTtaaacagcagtcaacatttacactcaacacatttttaaagaaaaaatcgCTGTTCTGTGATTTCATCTAGCTCTAACCATCGGAATGAAGGAGTGCTGTTGGATCCTCGGCTCGTTTTGTCTGTGCAGTTCGTTTAAGGAGGACTGACTGGCTAATGTTAAGATATTCTGAGGTCATACggtcaataaatcaataaatttaaatagtgtTAGCTGCCTTGTTTGTGCCATTCCTGTAATATCAGTACCACGAGCTAGCTTAGACAGCACAATGAGTAACATACTGGAAAGACTGCAGAGAGCTTCCACCATACTgaaccctgtgaatgagccgttactgtagaaacgataacgtattagcctatcattcatgttatacacacacacacacacacacacacacacacagacagacttgCGCCCAACCGTAAACTCCACACTGCGGTTTTTGTGGGAATTTGCCTGAAACTATTTTTAAACCAGTATTATTTTCTgacattgaaaaataaaatatggataAATTGTGATtatgataaacattttatgaTCGCTGATTAATCAGTTTATCATAAtcataaaatgtttatcataGATGTATTACACAGACATGTTtgttaattaatgtaatgtgtttgtCAGGCACAAAACTTTGTTTACTGCCTAAATAAAACCACTCAAATTTTAGACGTTTCTGTATATTCTAATAAATGGGCTGAAAATTTGTTTTatgatcatattttttttctttca

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0051216 cartilage development biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0006508 proteolysis biological_process
GO:0030010 establishment of cell polarity biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88574 lncRNA upstream 8471 33125668 ~ 33125884 (+) True G74747
TU88509 lncRNA upstream 110024 33023976 ~ 33024331 (+) True G74686
TU88495 lncRNA upstream 209620 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA upstream 218382 32915540 ~ 32915973 (+) True G74676
XR_004577921.1 lncRNA upstream 394244 32738103 ~ 32740111 (+) True LOC117596969
TU88580 lncRNA downstream 106 33148537 ~ 33149053 (+) True G74750
XM_034303860.1 mRNA upstream 814448 32316988 ~ 32319907 (+) True LOC117597128
XM_026936385.2 mRNA upstream 1029064 32081919 ~ 32105291 (+) False LOC113540131
XM_034304145.1 mRNA downstream 26043 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 26043 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 26043 33174474 ~ 33249659 (+) False chd8
XM_026944648.2 mRNA downstream 108798 33257229 ~ 33259292 (+) True gpr25
XR_004577922.1 other upstream 207341 32926616 ~ 32927014 (+) True LOC117596970
LOC117596944 other upstream 252990 32880711 ~ 32881365 (+) True LOC117596944
LOC117597138 other upstream 386562 32745500 ~ 32747793 (+) True LOC117597138
LOC117596925 other upstream 391218 32742471 ~ 32743137 (+) False LOC117596925
TU88484 other upstream 391385 32742265 ~ 32742970 (+) True LOC117596925

Expression Profile