RNA id: XM_026910084.2


Basic Information

Item Value
RNA id XM_026910084.2
length 4907
RNA type mRNA
GC content 0.50
exon number 8
gene id kiaa0232
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2175540 ~ 2192893 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGGCAGCGGGAGAGAAGTTACCGCTTCTCCTGCTCCGCTTTTCCCCTGATTACACTGAATAAACGGCAGGTGATTCCGGAGCTGTCCGTCACCCACCATGAAGATCTCTGATTGCAAACTGAGCACGGTCCGTGTTCTTCTATAAGCTGCCCGTATTCTCTGAACCATGCCTGAAGATTAGAGCACCTCTCCTTGCCaaataccatttaaaaaaatctacatgaCCCTCCATGTAGACCTCCCCTTGTCCGTCCCACTGGAGTGAAACCCCCTTAGTCTTGACTCCTTCCCTTCCCACTGAGACCATCCTTCGTCAGCCTCTTGAAGACAAACCGGGACAATGTCCCTGCATTTGAAAATGGCTCCTACATAAGACCCTTCAGTCCCATGCGTCCTGTAAGCGGAGATTCGTCCGGTGCTTCCCCTCCCGAGAGTGTGTCGTTGCTGGGCTCTCTTTCCCCGTCCGATATGTCCCTGCTGCAGTCCCTGGGCCCAGTGCAGAGCTGGCTGGGCCAGGAGCTGGAGAAATGTGGCATAGACGCCATGATCTACACCCGATACGTCCTCAGCCTCCTGCTGCACGACAGCTACGACTACGATCTGCAGGACCAGGAGAACGACATCTTCCTGGGTTGGGAGAAGGGAGCTGGCAAAAAGTGGGGGAAGAGCAGGAGGAAGGGAGGGACAGACCTGAGTCTGGAGGAGATGAAGAAGCAGGCCGCTGTGCAATGCCTGCGCTCTGCTTCTGATGAAAACTCTGCAGTCGAAAGTTTGGTTGAGGAGCTTTGCTCCAAGCTCAAGGACattcagaaaaaacaaaaagaaaaagaaaaacaaacaattaagaAGTCAGATGAATCCCGATCTCCTGAATTGGCTGAATCACCTTCTTCTAAAGACCAGGTGGAAATGTACTATGAAGCCTTTCCACCTCTATCAGAAAAACCTGTTTGTCTCCAAGAGATTATGACCGTGTGGAACAAGGCTAAAGCGAGTGCAAATTCCAGCTCCTCATCTGCTGCCCCTCAAACAAGCACGGACACCTCCTCACCAAAAGACTGCACCAGCGAGGGTGAAGTCTTCAAGGATAAAGCACCCGACCAAAGCGCATTggtcaccaccaccaccactaccaacGAGAAGGCTCAGCACCGACgcagcaagaaagaaaaagagaaccGATACCACGGGGGTGCTTCTGGGGCTTGCAGCGACCAGGTTGTTTCTCAAAACAAAAGGCACGCCAGACATCGATCTGATTTGGGGCACCGTCCCCGGTCCTGGTCCTCTGGCTCCAGCGAGGGCGGCTCAAGCTCCAGTGGTAACCAGGGTGACACAAAGACCTGTAAAGGAGCTCGGATCAGACACAGGTCTCGCGAGGTTAGCAGCAGAAACAAAAAAGGGCGACAGCATGGGCAAGTCAAACTGGCCCTGAAGGCTATTGACAAAGAAGAGCGCAGAAACACAGGTAGCAGTTGCAGTGCCTCCGAAGGCCCTTTGAAGCACCAACAGCACTACACGAAAAAAGGCAAAAAGCCCTTAAGGGAGCTTCGGAAAGATCCCAGCTGGGTTGAGTTGAAAGAGTCTGGAGGTGAAGCCAATAACAACAGGGAATATATGGAAGAACCCCTTTGGTACACCGAACCCATATCGGAGTATTTTGTCCCGTTCAGCTGGAGTAAACTGGAGACAAAGTATCGAAGCAAACCAGATTCCCCCAATGACCTAGCTACGTCCATTGATGTGGACAGTCTGTCGGAGCAGGTACAAGGGATCTGCATCGCCAACACTTCATTTCAAAGGGCGTACCTTGCAGCAGGTACTTTCGTGGATGGGCACTTTGTTGAAGTGTCCAGTGAGGGAAACGAGGAGGCCACTGAACTGAATGGGACCTCAAGCTGCCCTCTTCCTGAGGATGGTAAAGATTTAGATGATGAGCATCTGTCTGAATTCACTCACTTCTATGAAGTTGATATATATCAATCCATATTGGATCCCAGTGCCTCAGATGCAGTACAAGAAAGTCGAATCTTAAACATGATTCGGCAAAAGAGCAATGAGCCAAGAGACATTGAGGCAGGGTGTTGTGTAGATTTAGATGGCTTTGAACTGCAGGGGGAAAGTGCAATAAAGGCAGATTCTTTGGGAGCTTCGGGAGATGATGTGATTCTTACGCAGGACATGGAAAACATCGCTCACATGTGGGAGTGCTGCTCATCATCTAGTTCTGAGGAATTGGAAGGAGAAAGCTGTGCAGGTGACTCTCCAGTTAGGCTCTCCCCACCGTTGGGCAGCGTGCCGTTTCACATGAGCGGGTTGTCGGGCACATTTGGAGAGCCTCCTATCCAAGATGTCAGTGGGAGCACGTCGGCCCTAGACTCCTGTTTCTCGCTCTTTGAGGTGCAGTGCGATAGCTCTGCTTTCCCCTTTTCCTGCGACTCGCTTACATCCAGTCGCGAAAACGTAGATTCAAGTAGCTGTCTGGATCCCCATGCAAACAAACAGTCTCGCTTGCTAATTTGGACCAAAAATAGTGCCTTTGATGAGAACGAACACTGCTCTAACCTGTCGACGAGAACATGCAGTCCGTGGTCCCACTCGGAGGAGACGCGCTCAGACATTGAGCAAGTCGCTGGCCAAGCAGATGAGTCTTCTCAGTTTGGCAGTGAGGACGTTGGCTGCATAATTCCTCCTGTTCCAACTTCATACCTGGAGGAGGAGTTTTTGGATTTCTTGCAGGAGAGCCCGAGTCACCAGCAAGATGAAATGAGTGCAGGCATAATGTCCAATCAGACCTTCAACAAGGTATCTAAACTGGAGTCTGTTTGTGGAATAGCATTAGAGCAGGACGAGAGCAAACAGTACAGCGCCGTTTTGTTTCCGGAAGACACCAACCAACAAAATGATGATTATAGctcaggaataataaaagatatTTGGATGGCTGTTGGAGACCGAGATTGTGTTTTAGCTCTTGAAGTGGAGAAAGCAGACGATGACTTGTTTTCGGAGGAGACGCCCAGCTGTCAGTGTGGCTGTCTTGACGGTGAGGCGAAGGAGCCCATCGAAAAGAAGGCTGTACAGCGTTCAGAGTACCATCTGTGGAAGGGTCAGAAGGAGGACCAAGGCCTGGCCAAAAATAAGGTCTCCAAGGTGGACGGAGGGGACTATGCAACACCTGCCAGGCCTTGGGATGTTGATTCGGAGAGGGACAATACATCATTTATTCTTGGAGGAGTGTACGGAGAACTAAAGACCCTAAGCGGTGACAAGGAATGGACTGTGGTTCCACCCATCAACACCTGCGGGAGCCTGCTGCAGTGTGCATCGGCTTCCTCATCTGATGTGGTAACCATTGCAGGCACGGATGTGTTCATGAATACAGGCAGTTGCTTTGCTCCTGGTCATAAGCCCCTGTGGCGACCTTTGGTGTCCTTTGGACAGAACGGTCAGGCTACCAAAGGGTCAGGGGAAAGACTGAATAAGGGATTTTCTGTTATCTTCCATGAAGATTTACTTGGATCCTGTGGAGGCTATTGTGGAGAGCAGCAAGGACTTGATTACCCATTTTCATCTTTCGATCTCAATAACCCTTTTTCCCAGGTCCTGCATGTGGAATGCTCCTTTGAACCAGAAGACATGGCCTCGTTCAGCCCAGGATTCAAGCCAAAGTCCATATTGTGCTCAAACTCTGACAACGAGCCATTCAGTCCAAGGCTATATGGCATCAACCGCACTCAGTACCGGGCCATCCGCATATCCCCGAGGACTCACTTCCGGCCGATATCAGCCTCTGAACTTTCTCCTGGCTGGTGTAGCGTATCGGATGGGGAGTCTGAAAAGGAGGAAATGAGTCTTCCCATTCCTGGTCAGACTGACCTCTTTGATGACCCACAGGCAGACCTCAAACCCCTGGAAGAAGACGCAGAGTGCGAAGGCCCTTACTACGGAAAGTCTGAACTGGAATCTGGTAAATTTTTACCCAGATTAAAGAAGTCGGGCATGGAGAAGAGTGCCCAGACGTCACTCGATTCCCAGGAAGGTGGGGGTACGACTCTGACAACTGTCGAGCAGGAGATTTGCTTAGACTGCGAAATCGCAGGAaaatcctcagcagcagtgtcaGCTGTGAGCTCTCACGCAGAGGCGCCTGTGGATACGCTTCAGAAAGAGGAGTCCTGCGTAGAACGGGAGGCTTGTAAGTGTGTTGGAGCAAACCAGCTTCTGGAATTTGGGAAATCATACGATGTGGTTCAAGATTTGCATGAGCTTCCGCTGTTGAGTTTTGGGGAGCGGAGTGTGACGAGTAGCCAGCGTGAGGATTGCTGGTGGCAGAATACGCTTTGTTCCTCCATGTTTTCAGGATCTCGATGCACAGAAAGCAGTAACATATGAGTCTGCTGCGGCTGCTGAGCGCAGAGGCATGGTAAAGCAGAACCGAGCTGAAACGCTTCAGAACCTCAGCTCTTTTCTCCTTCCGCATTAAACCGAGGAcgaggatgaagatgaggatgaggagcaGCTTCATCAGAACAGAACATCAAAACCTCTATTAATCTTTAAGTTTGATCCCCCTGCCCCTGCCCCTGCCCCCTCCTCTCACCCCAACCCTCTGTAGTCAGTACCATCTATTAGAAACTTAACCGaaggggaggtgtgtgtgtgtgtgtgtgtccgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgagtgtgtgtgtgggcgggcATTCGTTCTGGATCtgtttgaagtgtgtgtattaatcaGCTTTGACAAAGTCATGTAGGTGTTAATGATCCTTCGTTGAGTCAGGTGATCTTTACTTGAGCctcatctaatttttttttttttccccctttttttttcccccttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69298 lncRNA downstream 71529 2099576 ~ 2104011 (-) False G58534
TU69300 lncRNA downstream 74842 2085707 ~ 2100698 (-) False G58534
XR_004578088.1 lncRNA upstream 35353 2228246 ~ 2230981 (-) True LOC117597186
TU69364 lncRNA upstream 75299 2268192 ~ 2274161 (-) True G58585
TU69374 lncRNA upstream 155826 2348719 ~ 2826890 (-) True G58594
TU69378 lncRNA upstream 183700 2376593 ~ 2402304 (-) True G58598
TU69409 lncRNA upstream 342222 2535115 ~ 2567804 (-) True G58628
XM_034304107.1 mRNA downstream 6889 2115603 ~ 2168651 (-) True tbc1d14
XM_034304120.1 mRNA downstream 93784 2057472 ~ 2081756 (-) True LOC113524117
XM_026910248.2 mRNA downstream 101026 2071011 ~ 2074514 (-) False LOC113524116
XM_034304117.1 mRNA downstream 101388 2071011 ~ 2074152 (-) False LOC113524116
XM_034304118.1 mRNA downstream 101388 2071011 ~ 2074152 (-) True LOC113524116
XM_026910091.2 mRNA upstream 11896 2204789 ~ 2212601 (-) True LOC113523983
XM_026910111.2 mRNA upstream 91794 2284687 ~ 2348344 (-) False greb1l
XM_026910112.2 mRNA upstream 91794 2284687 ~ 2321069 (-) False greb1l
XM_026910110.2 mRNA upstream 91794 2284687 ~ 2321069 (-) True greb1l
XM_034303541.1 mRNA upstream 537893 2730786 ~ 2732506 (-) True LOC117597042
TU69291 other downstream 91611 2071024 ~ 2083929 (-) False G58534
trnav-cac_1 other downstream 175490 1999978 ~ 2000050 (-) True trnav-cac_1
TU68836 other downstream 482543 1692326 ~ 1692997 (-) True G58190
TU68413 other downstream 1126699 1041777 ~ 1048841 (-) False G57868
TU68216 other downstream 1318588 839432 ~ 856952 (-) False G57733
TU69336 other upstream 11659 2204552 ~ 2222099 (-) False LOC113523983
trnag-ucc_1 other upstream 465110 2658003 ~ 2658074 (-) True trnag-ucc_1
trnag-ucc_2 other upstream 473874 2666767 ~ 2666838 (-) True trnag-ucc_2
trnag-ucc_3 other upstream 479007 2671900 ~ 2671971 (-) True trnag-ucc_3
trnag-ucc_4 other upstream 483077 2675970 ~ 2676041 (-) False trnag-ucc_4

Expression Profile