RNA id: XM_034303966.1


Basic Information

Item Value
RNA id XM_034303966.1
length 1268
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC113525290
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 177871 ~ 184973 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGTGGTGTTAGCGGGAGGTCAGAGAGCTGTGAAAGAAACCTAACTGCAAATCATTCAAgtattattttacacactTGGAGATAATTACTGGTGCTGGTCAGGATGTCTGATTATATTCTggaaaagaaaagcagctcaacaCTTCTGAGGTCTAACATTCAAAAGCTTTCTAAGCCACTGATGGAGAAAAGAAGACGAGCTCGCATTAACCGCAGCCTGAGTCGACTGAAAAGCCTCCTCCTGCAGACGCTTCATAAACACACCACACAACATGCCAAGCTGGAGAAAGCAGATATTCTGGAACTGACAGTGAAACATATCAGAAACATGCAACAGAAAGCTGTGCTGGCGAGTTACCGAGCGGGGTACAGCACCTGTGCACGCGATGTGGCGCACTTCCTGGCcggctgtgagtgtgtgagcagtgagaTGAGGGTGCGTTTGCTTGCTCACCTGGCCAGGTGTTTATCAGAGATGAACATTGTCACTCCACCAGCCACTGCAGCATGCACATCTTCTGCACAGCTCAGCAACTATAAAACCAGAACCATCCTGTTCCCAGCAGTCATGACAAACAGTGTCTTCAGAGACATACTGATGAATAACGGGATGTTTACTCCTTTAAACTCCAGTGTGGTACATGTAAACCTCAGAGGGCAGCTGTGGAGACCGTGGTAGTCGGGGGTCAGTAGGAAATTTGGTCCCCGTGACAGGTTAAAGCTTTGGGCTGGAACATTCTCATTCTCCTGgacattttttgtttcttctggTCTCCTTGGCGAGATACTCGtcactacaaaaacaaaagtccTGACAGTTTTGTTCAGACCTGATCCTGCTCCTCCTACCTGGGTGGAGTCAAGCCAAAAAGCCCACAAGATGCACAACATGGAACAACACACTTATCcagtctgaaacacacagagtTGATTCCACCCACTTGTTTCAATTCCacccaggtaggaggagctggatcaggtccaactccaccccctggacgtTTGGTTCTCTACTTGCCCTCGGAGTCCCTTAACCCCCCTATTTATAGCACACCTGGTGGTAGAagaaacgttaaaaaaaaaaatgaataaattaaaaatacctCAAACCCTTACTGTGACTGTCAGCGTTTTCCAAGCCAGCAATGGAGAAATGTAGAAGAGTGACGTAACCCTGTTATCTAAATTtaaatccagatttctgtaaagctgctctgtcacaatgtccattgttgaaGCGcagataaataaaactgaattgagttgaa

Function

GO:

id name namespace
GO:0021794 thalamus development biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0001757 somite specification biological_process
GO:0045664 regulation of neuron differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67793 lncRNA downstream 323 177318 ~ 177548 (-) True G57526
TU67761 lncRNA downstream 19104 157913 ~ 158767 (-) True G57502
TU67741 lncRNA downstream 139918 32764 ~ 37953 (-) True G57488
TU67738 lncRNA downstream 140191 32764 ~ 37680 (-) False G57488
TU68151 lncRNA upstream 2776 183056 ~ 183265 (-) True G57706
TU68156 lncRNA upstream 12407 192687 ~ 197666 (-) True G57711
TU68169 lncRNA upstream 23693 203973 ~ 207155 (-) True G57716
TU68179 lncRNA upstream 33061 213341 ~ 256676 (-) True G57723
TU68183 lncRNA upstream 33061 213341 ~ 256676 (-) False G57723
XM_026912109.2 mRNA downstream 69777 99678 ~ 108094 (-) False bcl10
XM_026912108.2 mRNA downstream 69778 99678 ~ 108093 (-) True bcl10
XM_034303396.1 mRNA downstream 79811 84815 ~ 98060 (-) False LOC117596995
XM_034303395.1 mRNA downstream 79811 84815 ~ 98060 (-) True LOC117596995
XM_034303312.1 mRNA downstream 94148 65830 ~ 83723 (-) False ssx2ipa
XM_034303964.1 mRNA upstream 82166 262446 ~ 272620 (-) True LOC113525282
XM_026911758.2 mRNA upstream 82166 262446 ~ 266287 (-) False LOC113525282
XM_034303516.1 mRNA upstream 100254 280534 ~ 300017 (-) True eif2b5
XM_034303501.1 mRNA upstream 123403 303683 ~ 321689 (-) True LOC117597016
XM_034303482.1 mRNA upstream 166779 347059 ~ 497563 (-) False LOC117597012
TU67777 other downstream 79754 95428 ~ 98117 (-) False LOC117596995
TU68285 other upstream 110230 290510 ~ 298456 (-) False eif2b5
TU68328 other upstream 268445 448725 ~ 496852 (-) False LOC117597012
TU68368 other upstream 431963 612243 ~ 614243 (-) True G57830
TU68378 other upstream 503208 683488 ~ 746031 (-) True G57838
TU68254 other upstream 553275 733555 ~ 734771 (-) True G57740

Expression Profile