RNA id: XM_026912175.2


Basic Information

Item Value
RNA id XM_026912175.2
length 1171
RNA type mRNA
GC content 0.41
exon number 4
gene id cbln12
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33165942 ~ 33168027 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGATAAATAAGGCAGGAGTCATATGCTTCGTAGCTTTTCCAGTCTCTTCTCGCTTTATCCTGCACTGCAGAGGAGAAATGGCTGCATCAGACAGATCCTTTGATGATGGCTCTCAAATgtaatttcaattaaaaaacCTCCATATGCTTTTCCCACAGATACCATAGCAATCTATCAAGAAAATcacagtatttgtttttttttaaaagaaaaaaacattgtttgaagagggagaaaagaggaagagagaagccTCTTAGcccttttaatttaaaatttatttcaccTAGTACATTACGTGGATTATCAGCATCATTTAAGAGCATGCATACAGTGCTAGTTTGTCTATCCACCGGCGTGCCCACTCTTCTGGGGTTAATTCTGCTGTGGAATCCGTTGGTGGTTACAAGTCAGAATGACACTGAGCCTATTGTACTGGAAGGTAAATGTTTAGTTGTCTGTGACTCAACACCTTCTTCAGAACCTGCGAATAATGCATTGGGCATGTCAGTGCGCTCTGGCACTGGCCGAGTGGCCTTCTCTGCCACTCGCCAAACCAACCACGAGCCCACAGACATGAGCAATCGTACCATGATCATCTACTTTGATCAGATCTTGGTGAATGTGGGAGGTCATTTTGACCAGGAGAGCAGCGTCTTCTTAGCCCCAAGGAGAGGAGTGTACAGCTTTAACTTCCATGTAGTGAAAGCTTACAACAGACAAACCATACAGGTGAGCCTGATGCTTAATGGATGGCCAATGATTTCTGCCTTTGCTGGTGACCAGGATGTAACCAGAGAAGCAGCCACTAATGCTGGATTGGTGATCATGGAGAGGGGTGACAAGGCCTACCTGAAACTGGAGCGGGGCAATTTGATGGGGGGCTGGAAATATTCCACTTTCTCAGGCTTTCTGGTCTTCCCCCTGTAAAATAATACACATATCAAACCATGTGTACAGAAGGATTGGCCAGAAAACTGATTTAAATTAacagagctgaaaaaaaatgtcattatgtCCAAGCAAGCAAGACTAATCTAACagtagaataataaaatatcagatGATTTATAAGGAAACATATACAATCTGATCTTATTTTTCAGAgttaattaacattatatataaaatccttTAAGCAagatcattaaatataaataagaaacagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88575 lncRNA downstream 40068 33125667 ~ 33125874 (-) True G74748
TU88571 lncRNA downstream 42983 33122592 ~ 33122959 (-) True G74744
TU88564 lncRNA downstream 50945 33114744 ~ 33114997 (-) True G74737
TU88563 lncRNA downstream 57304 33108129 ~ 33108638 (-) True G74736
XR_004577944.1 lncRNA downstream 74814 33090206 ~ 33091128 (-) True LOC117596990
XM_026912180.2 mRNA downstream 30167 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA downstream 30475 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA downstream 31623 33131087 ~ 33134319 (-) True c4h14orf119
XM_034303864.1 mRNA downstream 188242 32972785 ~ 32977700 (-) True LOC117597141
XM_034303863.1 mRNA downstream 340375 32823558 ~ 32825567 (-) True LOC117597140
TU88573 other downstream 40798 33124633 ~ 33125144 (-) True LOC117597144
LOC117597144 other downstream 40822 33120792 ~ 33125120 (-) False LOC117597144
TU88570 other downstream 44535 33121099 ~ 33121407 (-) False LOC117597144
LOC117597199 other downstream 55624 33109818 ~ 33110318 (-) True LOC117597199
LOC117597204 other downstream 64302 33101134 ~ 33101640 (-) True LOC117597204

Expression Profile