RNA id: XM_026912179.2


Basic Information

Item Value
RNA id XM_026912179.2
length 1990
RNA type mRNA
GC content 0.43
exon number 3
gene id c4h14orf119
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33131087 ~ 33135775 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actggcggtaatgagacacaggtgagaatcatcatgcgTTACCTGGCGGTtcgacccgcctcctctccgtctgcagctgatgctcgaccacgccccGCTGCCACACTCCCTATCTGAGCTAGCCTGATAAACATACTCTCCACTCGCTTCATTGCCTAAGTGAAAACAAATCAATGTATTACATCAGTATTATGAGATTTTCTTCATAGAATATTTTAGCTAAATTTATCAAATAGCAAATGTGGATTGCtgcactagctagctagttgatTCACCCCACAGCTTCCAGAAACATAGTTTAGTTATTAGCTACTGGCAGATAGATGCTAGCTAGCAAAGTAATCTCCAATCTGGCAGTTTACCCCATGCCACCCCGGCTGAGAATAAGAGGTGTGCATATGAGAGATTTTAAAGGTGTTAGTGCACATCTTAAGATAcagatttaattaatataatgtatgCAAAACAGCAAGCCAGGGATAAAACAATCAATCAGCAGCATGGGAGCTCAAATCCAAGTGAAAAGCACAGACCGAGCTGCAGTGGTGACTGCGTGGCCTTTAGATGTTGTCAGGGACACAATGCCATTCACGCTACAGGTATAATGTGCTCAGGACCACCTGTGCAAGGCATTTAGCGTGATCCGATCACCAAGACACATTCAACCTGTCGAGATAATTACTTAGCACGGACACTGATTACCTGATAAGGATGTTAATACCAGGTCTGAAAGGGAAAATGGCCTGGTTTCATCATGCTCTGCAAGAAGCAAGCCTACCACAGTCACCTTCCACGAAGAGTCATACAACGAATAATCACGCATGCCTCGAGCCAAACCCCAGATCAGCTACGCCGGTAGCTTTATCCGAGGGCCAAGATTGGCCTCAGCTCCTCCAGTCCTCCATCACGTCCTACCCTTCTGCTTCACAAGAAATGGTCTGCTCGAGAGTGGGAGAGCACCAGCATACCTCGTCCCTCACTCAGAGTGACGGTCCAGTGCCTCTGTCATACGTGACTCTCCAGGAACAGCGCTGTGTGCTTAGCTGGTTTCTTGGCTGGGGTCCTTCTCAAAGAGAATGTTTTCTTCAAGACCTGATTTCAAAGGCAGTACCAGGAAAGGTTTGCAGCTTATTGGAGCACCTTAATAAACTTCAGGTGAAGGACCGGCCTCCCAACATTTTTGAGTGTCAGCTGAGGCTGTGGACACAGTGGTTTGATACGTGGACTGAAGAGGAAAGGAATGCCTTCTTGGCCACCCTGGAAGAGAAGGATCCAATGTTTGTAGCTCAGTTCTACAAAGTGCTAGCTAGTACTGCAGGAAGGGACTGATGGCctctgtataaataaattgttgttttttttccctgccaTCATCTATCACAGCGCATTCAACCCTGCCCTTCCTCTTAGATAAGGAATTCCTCAGTAAACGTTCCTCAGATTAATATCAGTATGCAGGGTGATCACCTGAAGGAGACAGCAGAATGCCGTTCTTTGCTATTTCCTTATTCTGTAATGTCGTTCAGGTGATCACCCTGCCTACTGATCTTAGTTCTGAAGAACTTTTACTGAGGAATTCTTTATGTAAGGGGAAGAGCAGGgttgaatgtgctgttataaatgACAGCATGAATGAATATTGAGGCATGATGTCAAAATATGATTAAAGTGAAAGTGTTGCTGATTTCAtacatgaaaacagaaaatctcAATGGTCACATGTCGAGTGTATGATCGCCACATTGCCTGCGTGGTCTGTATCTGCTTGATGCCAGGAATTGTatgttaatttacatttaattagaaCACTGATTTACACACTCCTCATAACAAACagtattttgctattttttaaattgtaatatgACACTGTAAAATTGGTTTTCAATTATTTTGAGTTTACTGTGCACACCACTATATCAGCTAATCACTTGTTATGTTCATTTATGAAGATGCtgataattaaattaataaaaggctgaaaaatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88575 lncRNA downstream 5213 33125667 ~ 33125874 (-) True G74748
TU88571 lncRNA downstream 8128 33122592 ~ 33122959 (-) True G74744
TU88564 lncRNA downstream 16090 33114744 ~ 33114997 (-) True G74737
TU88563 lncRNA downstream 22449 33108129 ~ 33108638 (-) True G74736
XR_004577944.1 lncRNA downstream 39959 33090206 ~ 33091128 (-) True LOC117596990
XM_034303864.1 mRNA downstream 153387 32972785 ~ 32977700 (-) True LOC117597141
XM_034303863.1 mRNA downstream 305520 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1403535 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1586453 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1597829 31528370 ~ 31533258 (-) True psmb5
XM_026912175.2 mRNA upstream 31623 33165942 ~ 33168027 (-) False cbln12
XM_026912176.2 mRNA upstream 31623 33165942 ~ 33168020 (-) True cbln12
TU88573 other downstream 5943 33124633 ~ 33125144 (-) True LOC117597144
LOC117597144 other downstream 5967 33120792 ~ 33125120 (-) False LOC117597144
TU88570 other downstream 9680 33121099 ~ 33121407 (-) False LOC117597144
LOC117597199 other downstream 20769 33109818 ~ 33110318 (-) True LOC117597199
LOC117597204 other downstream 29447 33101134 ~ 33101640 (-) True LOC117597204

Expression Profile