RNA id: XM_026913275.2


Basic Information

Item Value
RNA id XM_026913275.2
length 2230
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC113526329
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8085146 ~ 8101065 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACGCATTTCCGGTTCGTGTAGCTGAGGGACGCTTCCGCTGCAGCAGAGACGTTAGATGGACGCGCTCCGGCCTGCAGCGAGGAGGAGAGCGATATTTTGAGTTGAAATTTTCGTCTTCAGGCTTCACTCGGTGTTTGTAGCCGCCTTTCTGAAGCGCTGTGTAGATACTCTAGTGTTCTGGGTTGTGATTTTTGTTGTGTGTGCTTGAAGATGAGCTCCGGGACGAACGTCGTGCAGGTGACTAACGTGTCTCCGAGCGCCACCTCGGAGCAGATGCGCACTCTGTTCGGCTTCCTGGGAACCGTCGAGGAGCTCAAACTCTTCCCTCCAGATGACTCCACCATGCCGGTGACGTCACGCGTGTGCTTCGTGAGGTTTAACGAGCAGGAGTCGGTCGGCGTTTCCCAGCACCTCACAAACACGGTCTTTGTGGACAGGGCTCTTATAGTTGTGCCCTACGCAGAAGGTGTGATCCCGGATGAGTCGAAAGCTTTGTCGCTGATGGCGCCTGCGAACGCCGTCGCTGGGCTTCTTCCAGGAGGAGGACTGCTGCCGACACCCAACCCTCTTGCATCGATGGGAGGTGGTGTTCTGGGTGCTCTCGGTGGTCCCGCCATGTTACCTGGAGCTGGCATGAACCCCCAGgcTCTCTCTGCTGATCAGATTCTGAAGCTGATGACGTCAGTGGATCCAAAGATGAACCCGATGGCAGCGAGCATGGGTCTAAAGGCAGACGCTTCCAACAAGGAAATCGAGGAAGCCATGAAGAGAGTCCGAGAGGCGCAGTCCCTCATCTCGGCTGCCATTGAGCCCAGTAGTAAAAAAGACAGCAAGCGCAAGCATTCCCGCTCCAGATCCAGGTCTAGATCCAGACGCAGGAGATCTCGCTCTCGCTCCCGACACAGGAGGTCGAGCAGCAGGTCCAGAAGACGCTCCCGGTCCCGGAGTCGCAGACGTTCCCGAAGCCCCAGGAGGAGGAGATCCCGCTCCAGAGACCGCGGCCGACGCTCCACCAGCAAATCCAGggatagaaagaaagaggatAAAGACAAGAAACGCTCTAAAACACCTCCAAAGAGCTACAGCACCGCCAGGAGATCTAGAAGCACGAGCCGGAGACGAAGAAGGAGTGTTAGCCGATCTCCACGAAGATCTCCCAAGAGAAGAGGATCCAGGACACCATCACCAAGAAGACacaagaaggagaagaagagagatcGGGAAAGAGAGAAGGACCGAGAGCGCGACCGGGACaggagagctgagagagagcgCAGTCGTGACGAGTCTGACCGCTCCTccaacaagaagaaaaagagtaAAGATAAGGAGAGAGAGCGGACGTCCGATAGTGAGAAACGAGATGTGAAGATAAACAGCCAGGATTTCAGAGACGGCAGTAAGCAGCCAGTGACGCGAGCTGAGAATGTGACGCGAGACTACGACGAGGAGGAGCAGGGCTACGACAGCGAGAAGGAGCGGGAGGCGAAGGATTCTGACGATTCAGGCTCGTCTCCCGCACGCTACGAGGACGAGGGAGACAGCGCCAAGCACACCCCGAAACAGGCCAAGCAGAACGGAGACGACCACCACGAAGAACAGGACATGGAAGTGAGCGACTGAGACCTGCGTCCAGACCGACTGAACTTTGAATGAGGAGTATCGTGATTTGATTTGCCCTCGCGGCTGTGTCTCTTCTTTAATAACCTCAGAATTTAAGCGTTACTGTTTCTCATCCTTGCCCCTCTGATCGTTTAGACCTGACCGATTTGGGTTAAATAACACAAGAAAGTAGCCTGTGTTTTCTTTCCATCTTCTGATCGCATGTAATTTGTCCCGTTTTGGCCTTAAAAAGGGAAGAATTGTTAATTTATCAGTGTTCATCTCAAGTCTCCTCTACATtgctttccttttcttcctcagtAAATGATagataggtttttttttttttttttttttttttcttgggtcATCACTCTCAACACTGCATCTACCAGGACATGCTGTTTAGTGTCCACAGAtctcttgtttttgtgttgGAGAAAGTTTTTGCCCCCGTTGCATTCATCTGTTTTGATACCGATTTGGcgtaaatgtcattttaaatagaACGAGTTCATGAGACATGTACATGATTTAGTGCTTTATATTCCTAGGCTTCATATTCAGTAGGTGGCCATCCTGGACTTGGAattttttatactgtaaataaactcaCTTGAGTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72112 lncRNA upstream 298511 7786214 ~ 7786635 (+) True G60931
TU72113 lncRNA upstream 298511 7786267 ~ 7786635 (+) False G60931
TU71962 lncRNA upstream 383048 7611023 ~ 7702098 (+) True G60804
TU71966 lncRNA upstream 417927 7618473 ~ 7667219 (+) True G60807
TU71963 lncRNA upstream 467445 7593320 ~ 7617701 (+) False G60804
TU72309 lncRNA downstream 8413 8109478 ~ 8110443 (+) True G61096
TU72311 lncRNA downstream 16643 8117708 ~ 8118851 (+) True G61098
TU72411 lncRNA downstream 117029 8218094 ~ 8238482 (+) True G61162
TU72427 lncRNA downstream 190863 8291928 ~ 8326744 (+) True G61175
TU72429 lncRNA downstream 194306 8295371 ~ 8296101 (+) True G61176
XM_026913298.2 mRNA upstream 22307 8056056 ~ 8062839 (+) True LOC113526345
XM_026913930.2 mRNA upstream 31249 8034061 ~ 8053897 (+) False si:ch73-140j24.4
XM_034304005.1 mRNA upstream 31249 8034252 ~ 8053897 (+) True si:ch73-140j24.4
XM_026913931.2 mRNA upstream 31249 8034347 ~ 8053897 (+) False si:ch73-140j24.4
XM_034303519.1 mRNA upstream 53896 8016413 ~ 8031250 (+) True abcf3
XM_026913382.2 mRNA downstream 1340 8102405 ~ 8104017 (+) True znf830
XM_026913781.2 mRNA downstream 130115 8231180 ~ 8356530 (+) True LOC113526595
XM_034303539.1 mRNA downstream 364240 8465305 ~ 8504653 (+) True arhgef11
XM_026914284.2 mRNA downstream 408068 8509133 ~ 8524288 (+) True vangl2
XM_034304095.1 mRNA downstream 429123 8530188 ~ 8541291 (+) True si:cabz01074946.1
XR_003402765.2 other upstream 22307 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 1488585 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 1654569 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 1941509 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 1945774 6139300 ~ 6139372 (+) True trnat-ugu_1
XR_004578049.1 other downstream 594287 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 793405 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 1657395 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 1706256 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 1759829 9860894 ~ 9881226 (+) False si:ch211-168d1.3

Expression Profile