RNA id: XM_026913298.2


Basic Information

Item Value
RNA id XM_026913298.2
length 2227
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC113526345
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8056056 ~ 8062839 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGTCTCCTAGCAGAGGAGGAAACGGGGAAGGCCGAAGACTTCATGTATAAAGTAGCTAGctagaaatattattattagctaaatATTTATTAGTGTTATGAAGTACAGCGAAATGTGTTTACCTAGTGTTTAGTTGCGTTATTGAACGGAAATGACGTGATGCTAGTTCATGAAAACTTCAAGTTTTATCGTTCTGGCTAGTTTGCGCTAGCGTGCTAGCTTGTAAAGTGAAAGAGCCGCTGTTTGTTTTGATAgcatggtttaattttttttatccacaatGAATGAGAAATCGTAATCAATTCGTTCTATATATAATTACGACATTATTTATCTAATAAAGCAGTGTgtcagccgtgtgtgtgtgttttaagagtGTAGAGAAAGAGGAGCGCTGATTAGCTAGCTCTCAGACTAGCATTAGTGACTATGGGAAACTGTCTGAAATCCCCGACATCGGACGACATTTCGTTACTGCACGAGTCTCAGTCGGACCGAGCCAGCACCGGGGACGGAGCCGAGCCCGAGTTCGAGCCTCCTCCGCCCTATGAGGAGCAGGCACGCATGCCCGTGTACCATCCCACACCCAGCCAGACGTGTTTGGCCACCCAGCTGACGGAGGAGGAGCAGATCCGCATTGCTCAGCGCATCGGCCTCATTCAGCACCTGCCCAGAGGAGTGTTCGACGGAGGGAAGGACGGCTCTGAGAAGAAGATCCGAGAgTGTGTGATTTGTATGATGGACTTTGTATACGGCGACCCCATCAGGTTCCTGCCCTGCATGCACATCTACCACATGGACTGCATAGACGACTGGCTCATGCGCTCCTTCACCTGTCCTTCCTGCATGGAACCAGTCGACGCTGCGCTCCTCTCCACGTATGAGACCAACTGACCAGCTCGAGCCAGCTGCACGTCGCCATGCTCTCTGAAGAGACACCTTCCCCCCGGTTCTCAGCAGCAACATCCAGCAAAGAGCAGCCGAAGGCCTCCGTCGTGTCCTCAGCTGCACTAACTAGTTAACGGGTTAGTATAGAGGCCAATCTTTGAAGatacccaacacacacacacacacacacacacacacacttcttttccTTTATCTCACTGGTCATGCACATTCTGTATCAGTTATTCGCAATTTTTGGGGTATATTTGCAGCTGAAATAGAAGAGATTCCTGAGGACTGAACATCTCTGGTCTAGCGTTAGAGCAGAACTTTGTATTCTCAAGCACTTATCGGCTGTTCTGAGCTACAGTGATTGgacactttttcttcttcttcattttcttttttttttttttgaaaaaaacctgaaatggCTCCGCTGAAGAAATCTGGCACGGTTCTCTGTTGCTTTGACTAAACGTAGATCTGGCTCAGCAGTAATTTTAAGGCTCAGGGGTGTACAACAATCTCCCAAAACATGTGCTGACTGTATCACAAAGCTTCTTCGCCTCTGATTTACTGCTTATACCAGGACGGGCTCAGTAAAGTAAGCATTTATTACAATATGCATCACTTACACAATAACAAATGGCATATTTTAGCATCATTACCATACACCTTACACATGCTGTAGTGACATTTATACTAAAGTACTGTTGAACAGTAGTTCTATCAACACGCTCGTTctgatacattatcatttctacagaaaCTGTTGgcgcagggacttgtatgacagacgCTCCTTATCAAGGGatagtgcgaaaaacaaaaaatatccagtgagcagcaggtcTGTGAGCGGAAACGCCATGTTGCGttgagaatggctagactggctCAAGCTCACAGGAAGGTGACGCTAACTCAAATAagtactctttacaaccatggtgagcagaaaagcatctcagaacgcgcAACATGTCGATcctttccactcctgtcagccaagaactggaatctgaggctacagtgggtacatgcgtgtaataatgtataatgataTGGCAAGGCAGACGcttgtttagcatttttggaaggagtctccagtatcagtatGTCTTCCACCACTGGAAAGactacgctttgcggtttctcagtagcataagaagctgcttttatttttttctcttattaacgtcaagacAGAATAAACTGGATGCTagtgatgaaataaaagttaatgtttttataatgtaagtgacaacaatGCAAATGTTCCACACcgttaaacgtaactataaatggatcaaATGTATGACgtcattcttaaa

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11980 RNF11; E3 ubiquitin-protein ligase RNF11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72112 lncRNA upstream 269421 7786214 ~ 7786635 (+) True G60931
TU72113 lncRNA upstream 269421 7786267 ~ 7786635 (+) False G60931
TU71962 lncRNA upstream 353958 7611023 ~ 7702098 (+) True G60804
TU71966 lncRNA upstream 388837 7618473 ~ 7667219 (+) True G60807
TU71963 lncRNA upstream 438355 7593320 ~ 7617701 (+) False G60804
TU72309 lncRNA downstream 46639 8109478 ~ 8110443 (+) True G61096
TU72311 lncRNA downstream 54869 8117708 ~ 8118851 (+) True G61098
TU72411 lncRNA downstream 155255 8218094 ~ 8238482 (+) True G61162
TU72427 lncRNA downstream 229089 8291928 ~ 8326744 (+) True G61175
TU72429 lncRNA downstream 232532 8295371 ~ 8296101 (+) True G61176
XM_026913930.2 mRNA upstream 2159 8034061 ~ 8053897 (+) False si:ch73-140j24.4
XM_034304005.1 mRNA upstream 2159 8034252 ~ 8053897 (+) True si:ch73-140j24.4
XM_026913931.2 mRNA upstream 2159 8034347 ~ 8053897 (+) False si:ch73-140j24.4
XM_034303519.1 mRNA upstream 24806 8016413 ~ 8031250 (+) True abcf3
XM_026914074.2 mRNA upstream 41537 8011970 ~ 8014519 (+) True polr2d
XM_026913275.2 mRNA downstream 22307 8085146 ~ 8101065 (+) False LOC113526329
XM_026913276.2 mRNA downstream 22309 8085148 ~ 8101065 (+) False LOC113526329
XM_034304139.1 mRNA downstream 25238 8088077 ~ 8101065 (+) True LOC113526329
XM_026913280.2 mRNA downstream 25238 8088077 ~ 8101065 (+) False LOC113526329
XM_026913279.2 mRNA downstream 25250 8088089 ~ 8101065 (+) False LOC113526329
XR_004578001.1 other upstream 1459495 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 1625479 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 1912419 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 1916684 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 2459930 5580144 ~ 5596126 (+) False LOC113547291
XR_004578049.1 other downstream 632513 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 831631 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 1695621 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 1744482 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 1798055 9860894 ~ 9881226 (+) False si:ch211-168d1.3

Expression Profile