RNA id: XM_026913621.2


Basic Information

Item Value
RNA id XM_026913621.2
length 5467
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC113526517
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7543681 ~ 7675424 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAGCGCGCGCGTCCCTGTGGGCTCGGGCCCCCTCTGGAGCCGTCCTCATGGCTTTGGGGGCCTCGCTTCCATTTTCCATTATGATGTACCGGACTACCGGAGCGGCGGCGCAGTCCGACACCTCGCAGTAGAAGACAATGTGACGGAGGAACAGCACACTCCTGGGCAGGCTGCCATTCAAAGCgATCGTGAGTGTGCCCCCGACACGGTGTGTGAAGATGCCGAGGACGGGCGTCTGACGAGGAGGAGGTGCTCTCCTGGGGAAGGGGAcgagggggaggaggaggacgaggagcaCAGCTGCCGTTCCTGCCACCAGGTTTTCGACTCAGCGAGCGATCTTAGCCAACACAAGATTAATCAATGCCAGCTGACAGatgGGGCTGATTTAGAAGATGACCCATCCTGTTCCTGGCCTGCTTCTTCACCATCTAGCAAAGACCAAACATCTCCAGTCCACGATTACGATTTTGGTGAAGATGAAGGGGGCCCTGGCTTGCCCTACCCATGCCAGTTCTGTGACAAATCATTCAGTCGCCTGAGCTTCCTTAAGCGCCACGAGCAGAGCCATAGCGACAAGCTTCCTTTCAGCTGTACCTTCTGCAGTCGCCTATTCAAGCACAAGCGCAGCCGTGACCGGCATATCAAGCTCCACACTGGTGACAAGAAGTACCACTGCAGTGAGTGCAACTCTGCTTTCTCACGCAGTGACCACCTTAAGATCCACATGAAGACGCACGCCACAAACAAGCCTCATAAATGCCCTGTGTGCCGCAGAGGGTTCCTGTCCTCCAGCTCCCTCCTTGGACATATGCAGGTGCATGAACGAGGTAAGGAAGGTCAGAGCACAGGGATCTCTGGAGGAGAGGAGTGGAAGCTAAAGGAAGCACGCAAGTGCAGCCGCTGTGAAGAGGGGTTTGATGTGCCCGAGGAGCTCCAGAAGCACATTGCAGAGTGCCACCCTGAGTGTTCACCCCCAGAAGAAGGAAGTGTAGGACCTGGTCTGCAGTGCATCTACTGCCATGAGCCATTTAGTGATGAGGGTACTTTACTTAGCCATATTGACCAGGCACATAGTCGAGACCAAAAGGGCCATATATGCACTGTATGCTCTGAGCACTTCCCTACTGTGGAAGAGCTGTATGCACACATGGACATTCACCAACTCCCAGAATCCAGCAACCACAGTAACAGTCCCTCTCTGTTGACTGTAGGATACACATCTGTTTCAAGCACGACTCCAGACTCAAACCTTTCTGTTGATAGTTCAACCATGGTAGACACTGCTCCCACTGTGCCCAAGACTCGTGGAAGAAGAAAGCGTGCTGCCCAGCACACAAATGATATTTGTGGACGACCTGCTAAACAGCCTAAAGTAGCTTACAGTTGCATCTATTGCAACAAACAAGTATTCTCCAGTCTTGCTGTCCTTCAGATTCACCTAAAGACAATGCATGTAGATAAACCCGAACAGGCCCATACTTGCCAGTTCTGCTTAGAGATCCTTCCATCTCTGGTTAACTTAAATGAGCATCTGAAACAAGTCCACAATGCTGAAGATCCTTCCACCCTACTTGCCAGCTTGTCTGATGCCTTGTTACAGTGTAACTTTTGTCCAGAGATGCTTGGAGATCTCAATGCCTTGCAGGAACACATCCGTTGCTCTCATGGCTTCCCCAGCCCAGTAGCCAAGGAGAGCAATGCCTTTTTCTGCCCTCAGTGCTTCATGGGATTTCTGACTGAGGCCACACTAGAAGAACATGTACGACAGACCCACTGTGATTCTGGAAGCTTACGATTTGACTCACCACTTGCAGTCACTCCTAAAGATCCCATTGTGGAGGTGTATTCCTGCTCTTATTGTACCAATTCTCCCATCTTCAACAGTGTCTTGAAGCTGAACAAGCACATCAAAGAAAACCACAAGAACATCCCCCTGGCACTGAATTATATCAACAATGGGAGAAGAACGCATAGAGCCCTTAGCCCTTCATCTTCCATATCTGTAGATCAAGCTACCCTTCTCAAACATGGCAGCACTTCATCCCGCTCAGCAAGTGAATTCATCTGTAACCAGTGTGGTGCTAAGTACACTAGTCTTGATCTTTTCCAGACTCACCTGAAGACTCACCTTGATGGTATGCTACCACAACTCACCTGTCCACAGTGCAACAAGGACTTTCCCAGCCAGGAAGCTCTGCTAAAGCATGTGACTGTCCACTTTACTGTCACTTCCACATACTACATCTGTGAAAGTTGTGACAAGCAGTTCACATCAGTAGATGATTTGCAGAAGCACCTTCTTGATATGCACACCTTTGTGTTCTTTCGTTGCACTCTTTGCCAAGAGGTATTTGACTCTAAAGTATCAACTCAACTTCATCTTGCAGTAAAACACAGCAATGAGAAAAAAGTCTACCGCTGTACATCTTGTAACTGGGATTTCCGTCATGAGACTGATCTTCAACTGCATGTCAAGCACAGTCATTTGGAGAACCAGGGTCGAGTTCACCGCTGCATCTTTTGTGGTGAGTCCTTTGGCACAGAGGTTGAGCTGCAGTGCCACATTACCACACACAGCAAGAAATATAATTGCCGCTTCTGCAACAAGGCTTTCCATGCTATCATCTTGCTGGAAAGACATTTACGTGAGAAACATTGTGTGTTTGAGGGAAAGGCCCAAAACTGTGGCACCAATGGCTCTACAAGTGGTGGTGGTGAATCAGTTGCTAAAGATGATGCAGACCTGCAGGGCATCCTCACCAATAGCCATGGAGGACCTGGTACAGGGGAGTCTCACAACAGTCATGATGGAAGTGAAGAGGATGTTGAGTCCTCAGAGGTCATGTATACCTGTGACATCTGTGGGGCCTCTTATACTATGGAGTCTCTCCTGACCAATCACCAGCTCCGTGATCACAACATCCGACCAGGAGAGACTGCAATGCACAAGAAGAAGGCAGAAATTATCAAGGGGAGCCACAAATGCAATGTTTGCTCTAGGACGTTTTTCTCTGAAGCAGGGCTCCGGGAACATATGCAAACTCACCTGGGACCTGTAAAGCATTATATGTGTCCCATTTGTGGAGAGCGCTTCCCCTCTCTGCTTACTTTGACAGAGCATAAGGTTACTCACAGTAAGAGCTTGGACACAGGCAGCTGTCGAATTTGCAAGTTACCATTGCAGAGTGAGGAAGACTTCCTGGAGCACTGTCAGATGCATCCAGATTTGCGCAACTCTCTGACTGGTTTTCGCTGTGTGGTCTGCATGCAGACCGTTACATCAACCTTAGAGCTGAAGATCCATGGCACCTTCCACATGCAGAAGACAGGAGCCATGTCCACCAATCACCCTAGTGGGCGTCCCACTATTCctcaccaccagcaccaccagaGTCAGAAGCTCTTCAAGTGTGCTTCATGTCTTAAAGAGTTCCGCTCCAAGCAGGACATGGTGAAGCTTGATATTAATGGACTACCATATGGTCTCTGTGCCACATGTGTAAGTGCTAGCAAAAGCTCCAGTCCAACCATAAATGGCGGAAAACAGCAGCAACCAGGGGGGCAAACACCAGCACCCTCTAATGCAGGGTGGAACCAAGGGGAAAGTCTGAGCCCCTGTGGTGTAAAACGAAAGGGGACCGGCTATTCCACATCATCCTCTTCATCAATATCATCCACTGTTGCGAAGACAAGATGCTCCAGCTGCAATGTGAAGTTTGAATCAGAGGTAGAGCTGCAGACACACCTTCAAACAGTGCACAGAGAGCAGACAGGAGAGGGAAGTGGCAGTCAAGTGAGGACCCCTCAAGGATCCCCCATGCCAAGAGTGAGTCCTTCCCAAAGTGAAGAGaaGAAGACATACCAGTGCATTAAGTGTCAGATGGTCTTCCATAGTGAATGGGACATTCAGGTTCATGTTGCAAATCATATGCTTGAAGAGGGGCTGAACCATGAATGTAAGCTGTGCAGTCAGACTTTCGACTCACCGGCTAAGCTGCAGTGTCACCTGATCGAGCACAGCTTCGAAGGCATGGGAGGAACCTTCAAGTGTCCTGTCTGTTTCACAGTATTCGTCCAGGCCAGTAAGCTTCAGCAGCATATTTTCTCAGCTCACGGTCAGGAAGATAAGATCTACGACTGCACGCAGTGTCCGCAGAAGTTCTTCTTTCAAACAGAGCTTCAGaATCACACTCTGAGCCAGCATAGCAGCAGCTAACAAGGAAGATCGATTCAAAGAGTCTCGTCAGTGACATCTGGACTCCAATCTACCAATCATTGTGctctttttgtcagttttgcactgaaattttcatttcagttaacaaaaaaaattgagagcCAGAGACAGGACATATCCTTGTGAAATTCAATGTTGATATGTTGTTAATCCAACATGTTTGTAAATACTGTTCTTTCTGTCTTGCTGTTTGTCAGCCCTTATGCGTTCTTGCAGTCACCATTGTACATACTgtttgttgaggaaaaaaaagtattacacTTTGTTTAAACCATTATAAATGGATGAATCATCGGCCAGAGACCTTTGAGGTCAGGTGGACGCTTTTTAACGGCTGATACACGTCCAGTTGTCTGTGATGCACCCTCTCAAGCCGTGGGATGAAATGCCTGATCACCAGCATGGCCTGAGCAAAACTTTTTACAAAAACTACACACCTCAGCTGAAATATGTGGACTACATTGTGTATCACAAATGTTCTGAaagcaaacagaaaaatgaTAGAAAGGATACTTGATATATGCAAAAACAGTTTTGTGTTAAAAGAAATATTGAAAGACTCTTTGGGTTGGCAGGAATTTACAGATGGGACCCATTCCTCATTCTCCCTCCCTCCTGATGAGAAACTGCTCTCCACACTTGTACATTTCTGTTATTAATGTTTACCCCTCACTGAAGGCTGGATACGACTAGAAttgtcctttcttttttctttttgtcagaCATGCAATGGGGAATAAATGTATCCTCTGTTTCGGGTCTGTTCTGGCTGCTATCACTTGATTATATGGTGAGGTTCTGgtcagaaaaatgaaaaaaaaagaaaaagtatttcGACCCTTCGTCCACGAGTAAGCCGAGCTGAGTCATTTCTGTCGCTATGCTATTGTTCTATTCATGCTGTGAGACATGGTAATCTGTACAGTATTCTCATGGATCTCTGGTATATGCCAGTTTGGAATTAGTCGAACCTGAAATGCACTTTTGTAACACTCCATACTTTCATGGATGTTCATGTTCGAAAGGCGCTTGACAAGTGACTGTCAATTCAGCCACAAGACTTTGGGAAATCAAACTTTTAACAAGGGTGACAACTTCTGGTGTTAACGGGGGGGAAAAAtgttatatacaaatattaaccGGGGTCTGAATTTGCTAGACCTCTTTTTTGTGTTCTCATGtgatgaaaacattaaaaaaaaacattaaaattgtaTGAAGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71937 lncRNA upstream 57530 7485766 ~ 7486151 (+) True G60783
TU71862 lncRNA upstream 312756 7230651 ~ 7230925 (+) True G60722
TU71670 lncRNA upstream 446518 7092397 ~ 7097163 (+) False G60576
TU71672 lncRNA upstream 446518 7092397 ~ 7097163 (+) True G60576
TU71678 lncRNA upstream 510186 7016087 ~ 7033495 (+) True G60580
TU72112 lncRNA downstream 110790 7786214 ~ 7786635 (+) True G60931
TU72113 lncRNA downstream 110843 7786267 ~ 7786635 (+) False G60931
TU72309 lncRNA downstream 434054 8109478 ~ 8110443 (+) True G61096
TU72311 lncRNA downstream 442284 8117708 ~ 8118851 (+) True G61098
TU72411 lncRNA downstream 542670 8218094 ~ 8238482 (+) True G61162
XM_026913850.2 mRNA upstream 13006 7482228 ~ 7530675 (+) False ss18
XM_026913851.2 mRNA upstream 42977 7482229 ~ 7500704 (+) True ss18
XM_026913848.2 mRNA upstream 42977 7482229 ~ 7500704 (+) False ss18
XM_026913509.2 mRNA upstream 101427 7423560 ~ 7442254 (+) True LOC113526462
XM_026914101.2 mRNA upstream 138063 7396810 ~ 7405618 (+) True LOC113526768
XM_026913884.2 mRNA downstream 68007 7743431 ~ 7786176 (+) True LOC113526636
XM_026914108.2 mRNA downstream 115403 7790827 ~ 7810568 (+) True LOC113526772
XM_026914109.2 mRNA downstream 115403 7790827 ~ 7810568 (+) False LOC113526772
XM_034303615.1 mRNA downstream 262090 7937514 ~ 8008440 (+) True cacna1eb
XM_026914074.2 mRNA downstream 336546 8011970 ~ 8014519 (+) True polr2d
XR_004578001.1 other upstream 947120 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 1113104 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 1400044 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 1404309 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 1947555 5580144 ~ 5596126 (+) False LOC113547291
XR_003402765.2 other downstream 380632 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 1019928 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 1219046 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 2083036 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 2131897 9807321 ~ 9832280 (+) False gal3st3

Expression Profile