RNA id: XM_026913759.2


Basic Information

Item Value
RNA id XM_026913759.2
length 4070
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC113526581
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7237070 ~ 7334917 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctcccctctctaaCGGAGTCGCAGCCTCAGTACCAGCGAGGCGCTCAGAGCGGATACACGGGCGGAAGGAGAGCTTCATGCCGCTGCCGCTTGCGCATTAACCGGGACGTTTTCTCCCCAAAACCACGCGGGATATTTACCGGGAATTCAAGCGGAGATAGAAACAAATAAAGGACAAGACTAAAGTGTCTCAATGGAGCTAAGCTTAGGCCGGGGCTCGCTTCTGCTCTTCCTCCTGACAGCACTCCAGACTGGCACAGAAGGCAGAAGCTCCGTACCATGCAAGCCTGGGTTTTCTGAAGATGTGTATGACGCACCGATGCCTGAAACCCTACTGGAGGGACAGCCGCTTCTCAcagtgaGGTTTCAGGACTGCGGACGAGGAGAGCGAGTGCACTTTGAGTGCAGCCAGCCGACAGATTTCCGGATCGAGATCACCGGGGAGGTGTTGGCTCTCTGGGCACTCCAGCCATCTTTATCCTCCCTgtcctccttctcttcttctccgCTGCTTGTTATAGCGCGAGATGTGTCCACGCAGGAGCAGTGGCAAACCGAGATCCGGCTCCGGCCATCGGCAGGCCGCGAGTCACAGGAGGCGCTCGAGTCCAGGAGACTGCCGGAGATTGTAATCCCCTCGCGGCAGGTGAACAGCCAGATCAAACGCATGAAGAGAGACTGGGTTATTCCTCCTATTAACGTCCCGGAGAACTCCAGAGGACCTTTTCCACAGGAGCTGGTCAGGatccgCTCGGACCATGATAACAAGGTGAACCTGCGCTACAGCGTGACCGGCCCCGGAGCTGACCAACCGCCCACCGGGATCTTCTCCATCGACCCCATCTCAGGAGAACTGAGCGTGCTCAAACCACTTGACCGCGAGCACATCGCCAGCTTCCACcTGAGGGCGCACGCAGTGGACCTGAACGGCAATCAAGTGGAAAACCCTATTGACATTGTGATCAACGTGATCGACATGAACGACAACCGACCCGAGTTTGTTCATCAGATCTGGAATGGGACTGTACCAGAGGGCTCcaggccagGCACGTCTGTAATGACGGTAACAGCTGAGGATAAGGACGACCCGCGCACGCAGAACGGCCAGCTACGCTATAAGATCCTGTCCCAGAACCCTGAGAGCCCGAGCGCTAACATGTTCACCATCAACAACCGCACTGGCAGCATCATCACTGTGGCGGCCGGGCTGGACCGAGAGaaagttcctCAGTACACGCTGATCATCCAGGCCACCGATATGGAGGGGAACCCGATGTACGGCCTTTCCAACACCGCCACGGCAGTCATCAGGGTGACTGACGTCAACGACAATCCACCAGAATTCACCACCGATGCTTTCTACGGTGAGGTGCCGGAAAATCGTGTGAACGTGATTGTGGCCAATCTGACAGTGACGGATAAAGACCAGCCCAACACACCAGCGTGGAACGCAGTGTATAAGATCACAGGTGGAGATCCGACTGGCCGCTTCTCTGTCCCCACTGACCCCACCACCAACGAGGGACTGGTCACCGTTGTCAAGCCCATTGACTACGAGACAACCCGGACGTTTGTGCTCACCGTAGTGGTGATGAACGAGATCCAGCTAGAGCGAGGTATCCACCTTCCACGCCAGTCCACAGCCACTGTTTCTGTCCGCGTCATTGACGTCAATGAGAGCCCTTACTTTGAGCCCAATCCCAGACTCATCAGGCTGGACGAGGGCATGCCGGCCGAGTCGGCGCTCACCACGTTCGTAGCCCAGGATCCGGACCGCTTCATGCAGCAGACCATCAGATACTCGAAACTCTCAGACCCGGCTGATTGGCTGAGAATTGATTCAAACACCGGACGCATCACCACCATCGCTGTTCTGGACCGAGAGTCTCCGTATGTTCAGAATAACCTGTACAACGCCACATTCCTCGCCACCGATAGCGgcaTTCCTCCAGCCAGTGGAACGGGCACCCTGCAAATCCTGCTGCGTGACATTAATGATAACGCTCCTCAGGTGTTCCCTCACGAGGTCGAGATGTGCGAGAAACCCGAAACCAACGGCATCAACATCACGGCTCTGGATGGAGACCTGAACCCCAATGCTGGACCCTTCGCCTTCGAGCTGCCTGCTCGGCCCAGTGACATCCGGAGGAACTGGACTCTCACACGCCTCAATgGTGACCACGCCCAGCTGAGCCTGAAGATCGGCTTCCTAGAGAGAGGCATCTACGAGATCCCGATCTACATCACCGACTCCGGCAACCTGCCCATGTCCAACACGTCCTACCTGCGCGTGAAGGTGTGTCAGTGTGATCAGAACGGAGACTGCACGGATCAGGAGTTCCTCGTGGCCGCCGGACTGGGCACAGGCGCCATCATCGCCATCCTGCTCtgcatcatcatcctcctcaTCCTGGTGCTGTTGTTTGTGATGTGGATGAAGAGGAAGGATAAAGAGCGTCAGGCCAAACAGCTGCTGATCGACCCCGAGGATGACGTCCGAGACAACATCCTTAAATACGATGAGGAAGGAGGTGGAGAGGAggaccaggatTATGATCTGAGTCAGCTGCAGCAGCCGGACACTATGGATCCGGAGTGTGTGAAGCCTGTCGGGATCCGCAGACTGGACGAGAGACCGCTGCACCCGGAGCCTCAGTACCCGGTCAGATCAGCCGCTCCACACCCTGGAGATATCGGAGACTTCATCAAtgagGGTCTGAAAGCAGCCGACGGTGACCCAACAGCTCCTCCATACGACTCGCTGCTGGTGTTCGACTACGAGGGCAGCGGCTCGACAGCCGGCTCGCTCAGCTCCATCAGCTCGTCCAGCAGCGGCGGAGACCAGGACTACGATTACCTCAACGACTGGGGACCGCGATTCCGCAAACTCGCCGACATGTACGGAGGCTCAGACGAGTGAGACGGAGCGAAAACCgagggagaaaacacacacatgcctggCTTTTCTCTACCCCCACCCCCATTCTGACTGATGGACGAGGACAGCTTCTGTCAACCGATTTTCCCCCTGAGAACAGACGGATTTAAGCAGAAAACTAAAatgtattatgaaaaaaaaaatgggaaaaaaaattgacaaaataaacaaattcctAGGCTCAGTGTTGTAGTGTAGGCAGATTTATGCTTGTTGAAGGCTTTTGGCACTGAAGATGATCTGGAGATGAGCGGAAGGGGAGACTGGGAAGAGATGACGTCACTGTTTTTGGATTGTAGGCTACGATAAGCGCTCAGTTACACTGACTTGAATTTTACAGTACAGAAGCACTGGGATTTAACGTgcctttttgtacatttttttttggatctgAAGGATAGTTTGTAGTATGTTCAAGGCTTTAATGGTACTGACATTTGGAGTGATTTCAAGacaaaagtgttaatttctgaTCTGCTTCATGACGTTTCTTTTTCCAGGTTACCATCTACAAAGAACAGTTATTTAACGAAGTTATGAACAGATCAAAAATGAAGGTTCCTACCTTAGCTAGGACAAAATGATTGACAAGatcagtgtacagtacagtaaaaatgtagaagtctttttttcatttaaagttgAACGTTACATATGCAGATGGTTGCAGATGAAGGGAGTTTTCAAGAAAAAGTTTTCTTTCTGAAGTggtattacattttacagaaaaaggCAGCAGTTGTTTCCTTTCTGCTCTCATTCATGTACACTTCATTTGCCTTAGCTGCCATCTGATGCCCTCAGTTTTTACTCtactgtaaaaatgtgtgtacatatttcttttatttttttcttcttttactttTGATGTAGTCGATAAAGAAGTGCAAAAACGGTTTCAatcttgtaaatgtaaaaaaaataataataagtaaattgggctacatttttttgcatgtttttatcttttcacAACAATGGTAAAAAAGGACCTCTTTCCAAAATTTATGTACGGAGTGCTAAACACGATTTCAGCTGATGCAAGATATGTGGAAGGTacgagtttttttttgtaagaaaaaaaaataaagagacaaaaaaataataaatggtaaAGCAAGttactcca

Function

GO: NA

KEGG:

id description
K06736 CDH2, CDHN, CD325; cadherin 2, type 1, N-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71862 lncRNA upstream 6145 7230651 ~ 7230925 (+) True G60722
TU71670 lncRNA upstream 139907 7092397 ~ 7097163 (+) False G60576
TU71672 lncRNA upstream 139907 7092397 ~ 7097163 (+) True G60576
TU71678 lncRNA upstream 203575 7016087 ~ 7033495 (+) True G60580
XR_004577959.1 lncRNA upstream 285265 6946325 ~ 6951805 (+) True LOC117596999
TU71937 lncRNA downstream 150849 7485766 ~ 7486151 (+) True G60783
TU71959 lncRNA downstream 245918 7580835 ~ 7610190 (+) True G60801
TU71963 lncRNA downstream 258403 7593320 ~ 7617701 (+) False G60804
TU71962 lncRNA downstream 276106 7611023 ~ 7702098 (+) True G60804
TU71966 lncRNA downstream 283556 7618473 ~ 7667219 (+) True G60807
XM_026947458.2 mRNA upstream 468334 6759401 ~ 6768736 (+) True sharpin
XM_026947533.2 mRNA upstream 481270 6740573 ~ 6755800 (+) True gpaa1
XM_034304127.1 mRNA upstream 481270 6740791 ~ 6755800 (+) False gpaa1
XM_026947534.2 mRNA upstream 481270 6742675 ~ 6755800 (+) False gpaa1
XM_026947535.2 mRNA upstream 499871 6733584 ~ 6737199 (+) True LOC113547276
XM_026914101.2 mRNA downstream 61893 7396810 ~ 7405618 (+) True LOC113526768
XM_026913509.2 mRNA downstream 88643 7423560 ~ 7442254 (+) True LOC113526462
XM_026913850.2 mRNA downstream 147311 7482228 ~ 7530675 (+) False ss18
XM_026913851.2 mRNA downstream 147312 7482229 ~ 7500704 (+) True ss18
XM_026913848.2 mRNA downstream 147312 7482229 ~ 7500704 (+) False ss18
XR_004578001.1 other upstream 640509 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 806493 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 1093433 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 1097698 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 1640944 5580144 ~ 5596126 (+) False LOC113547291
XR_003402765.2 other downstream 721139 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 1360435 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 1559553 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 2423543 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 2472404 9807321 ~ 9832280 (+) False gal3st3

Expression Profile