Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026914074.2 |
| length | 788 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 4 |
| gene id | polr2d |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 8011970 ~ 8014519 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K03012 | RPB4, POLR2D; DNA-directed RNA polymerase II subunit RPB4 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU72112 | lncRNA | upstream | 225335 | 7786214 ~ 7786635 (+) | True | G60931 |
| TU72113 | lncRNA | upstream | 225335 | 7786267 ~ 7786635 (+) | False | G60931 |
| TU71962 | lncRNA | upstream | 309872 | 7611023 ~ 7702098 (+) | True | G60804 |
| TU71966 | lncRNA | upstream | 344751 | 7618473 ~ 7667219 (+) | True | G60807 |
| TU71963 | lncRNA | upstream | 394269 | 7593320 ~ 7617701 (+) | False | G60804 |
| TU72309 | lncRNA | downstream | 94959 | 8109478 ~ 8110443 (+) | True | G61096 |
| TU72311 | lncRNA | downstream | 103189 | 8117708 ~ 8118851 (+) | True | G61098 |
| TU72411 | lncRNA | downstream | 203575 | 8218094 ~ 8238482 (+) | True | G61162 |
| TU72427 | lncRNA | downstream | 277409 | 8291928 ~ 8326744 (+) | True | G61175 |
| TU72429 | lncRNA | downstream | 280852 | 8295371 ~ 8296101 (+) | True | G61176 |
| XM_034303615.1 | mRNA | upstream | 3530 | 7937514 ~ 8008440 (+) | True | cacna1eb |
| XM_026914108.2 | mRNA | upstream | 201402 | 7790827 ~ 7810568 (+) | True | LOC113526772 |
| XM_026914109.2 | mRNA | upstream | 201402 | 7790827 ~ 7810568 (+) | False | LOC113526772 |
| XM_026913884.2 | mRNA | upstream | 225794 | 7743431 ~ 7786176 (+) | True | LOC113526636 |
| XM_026913619.2 | mRNA | upstream | 336546 | 7543836 ~ 7675424 (+) | False | LOC113526517 |
| XM_034303519.1 | mRNA | downstream | 1894 | 8016413 ~ 8031250 (+) | True | abcf3 |
| XM_026913930.2 | mRNA | downstream | 19542 | 8034061 ~ 8053897 (+) | False | si:ch73-140j24.4 |
| XM_034304005.1 | mRNA | downstream | 19733 | 8034252 ~ 8053897 (+) | True | si:ch73-140j24.4 |
| XM_026913931.2 | mRNA | downstream | 19828 | 8034347 ~ 8053897 (+) | False | si:ch73-140j24.4 |
| XM_026913298.2 | mRNA | downstream | 41537 | 8056056 ~ 8062839 (+) | True | LOC113526345 |
| XR_004578001.1 | other | upstream | 1415409 | 6595126 ~ 6596561 (+) | False | LOC117597080 |
| trnar-ucu_1 | other | upstream | 1581393 | 6430486 ~ 6430577 (+) | True | trnar-ucu_1 |
| trnat-ugu_2 | other | upstream | 1868333 | 6143565 ~ 6143637 (+) | False | trnat-ugu_2 |
| trnat-ugu_1 | other | upstream | 1872598 | 6139300 ~ 6139372 (+) | True | trnat-ugu_1 |
| TU70896 | other | upstream | 2415844 | 5580144 ~ 5596126 (+) | False | LOC113547291 |
| XR_003402765.2 | other | downstream | 41537 | 8056056 ~ 8062839 (+) | False | LOC113526345 |
| XR_004578049.1 | other | downstream | 680833 | 8695352 ~ 8724440 (+) | True | LOC117597156 |
| TU72678 | other | downstream | 879951 | 8894470 ~ 8896729 (+) | True | G61359 |
| XR_004578067.1 | other | downstream | 1743941 | 9758460 ~ 9774049 (+) | False | rbm14b |
| XR_003403991.2 | other | downstream | 1792802 | 9807321 ~ 9832280 (+) | False | gal3st3 |
