RNA id: XM_026914108.2


Basic Information

Item Value
RNA id XM_026914108.2
length 4028
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC113526772
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7790827 ~ 7810568 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCCCTCTAGGTGATGTAAAGTGGTAGAAGTGAAATCTGTACTCTACCGAAACGCGGAAGCTGGACGTGTAAAAGTTGTTTAGTTTTATGGGGTtgttttttacagtgtaatataaTCCGCATGAATTTGAATGACCCCAGCTGCTGCAGCTCGCTGTGTTTACGTGACGCTTGTACTTCCGGTGTGTGCTGAGCAGTTCCTGCTGGTGTCCCGGCCGCTCGCGGGTGCTGTGAGCTCTGTGTTGGTTTAGTGTCAGAAAGTGCAGATGAGTGGGATGCTCTGAGAGTTTGGGGtaaatcatttctctttattGCCCCTGAGGtgattttgttgttgctgtgagCGATGGCGGAGGCTGAAGAAGAGTTTCCTGAGCAGCTCGATGATGCGGAACTTTCACTGCGGGGAATTAACATGTTGCTGAACAACGGCTTTAAAGAGAGCACACAGCTCTTCCACACATACAGGAATTACAGCCCTCTGATGAGCTTTGGTGCGAGCTTTGTGAGTTTTCTGAATGCCATGATGACGTTTGAAGAGGAGAAGATGCAGGTGGCGTGTGAGGACCTGCGGGCCACGGAGAGACTGTGCGAGTGCGACAGCGCCGGCGTGATCGAGACCATCAAGAACAAGATCAAGAAGAATCAGGTggagggtcagaggtcacaggtGACCGTGATCGAGCGGCTGCAGAGGCTCATCATAGTGGCTGACTGTCAGGTTTATCTGGCCGTGCTGTCCTTCGTCAGACAGGAGCTCTCTGGATATATTAAAGCTGGCTGGATCCTTCGTAAGGCCTGGAAAATGTACAATAAGTGCTACAATGAGATCACCCGGTTGCAGGAAGCGTGTCAGAGGAGGTGCTCAGCACCACAGGGGGCACTTTCTTTTGCTCAATCCAAACAGAGTCAGAATGCCTCAATGCCTGATCCCACAGCAGCCCGCTCCAGTGAGTGTCCTGAACCTGAATCCAGTCAGGATTGTTCCCTGGCTCCTGTCTCAGAAGGGTCACGTGCTCCCAATCAGCTTAACGACAGCCACAAAGCGTCCTCCACTCGGCCCAAACACGGCATGAAATCTCAGCCGCGGCTCGATTACAGCGTGACCGCGGAGTCTCTGAGTCGACTCAAGGGTTCAGTCAGCTTCGGCTACGGCCTGTTCCACCTCTGCATCTCTATGGTGCCTCCTCACCTGCTGAGGATCATTAACCTGCTGGGATTCCCTGGCTCACGGCAGGAGGGGCTCAGCGCCCTCACGTACTCCAGCGAAAGTAAGGACATGAAGGCCCCTCTCTCTACacTGGCCCTGCTGTGGTACCACACGGTCGTACAGCCCTTCTTTGCACTGGACGGCACTGAAACAGAGGCAGGACTTCAGGCTGCTAAAGCCATACTTCAGAAGAAAGAAGCTGAATATCCTAACTCCTCACTCTTCATCTTCTTTAAAGGACGAGTGCTGCGGCTCGAGTGTGAGATCAGCAGGGCTTTAATATGCTTTAATAATGCATTGGAACTGGCTTCAGAACAGAGGGAAATCCAGCACATCTGTCTCTACGAGATTGGTTGGTGCAGTATGATCGAGCTGAGCTTCACTGAAGCGTACAGAGCCTTCGAGCGTCTGATGACGGAGTCACGCTGGTCCCAGTGCTACTACTCCTACCTCACTGGAGtgtGTCAGGGAGCTTCAGGTGATCTGGACGGAGCTTGTAGCGTATTGAAAGATGCGGCTCGGCTTTTCAAGAGGAAACACAATCAGATTGAGCAGTTTTCCATGAGGAAGgCTGAAGAGTTAAGGAAGCCCAGACCCACGAAAGAGCGATGTATGATGGCTGCCATCGAGGTTCTGTACCTTTGGAAAGCTCTTCCTAACTGCTCTAACACCAAACTGCAGCTCATGATTGAAGTTCTGCAGCAGATGGATGGCTTGTCGTATTGCGGACTGAAATACCTCCTGATGGGGGCCGTGCACAAAAGTCTAGGGGACAACGCAAACGCAATGCAGTGTTTTCAGATGGCTTTTAGAGATGAAGAAGGGTGTGTCAGTAACTCATACGTACAGCCTTATTCCCTCTATGAGCTGGGATGTGTGCTACTAGAAAACCCtgagtCTACAGCTAAAGGAAGAGCTCTGCTTCTTCAAGCCAAGGAGGACTTCTCGGCGTACGATTTTGAGAACAGGCTCCACGTGCGAATCCACACAGCTTTAGCTTCACTCACAGCAACAGCTCCACAATAACTCCTTTCCGATGTTCTCAGAAATAAGATGTACACGAGCCAGCAAAGAAATCTGAGacagaaggaagaaggaaggagCACAGCCTCAGACTGTTACTGATGATCATGGACTGTTGTTacataaaatgctgttttttttccccgagcgcactttatttttattttagatactCGATTAGAAAAGAGAAACGGTCAGTTTTAATGTAGAGTCCTACGTTGTGAAATATCAGGATGGTGAGTCATTGCTCAGTTACTTTTTGGAAAGTCAAGTCACAAAGCACATGATTTCTGATTTTTGGACTGCGTTATGTTTAAATTAGTGCCTGTGAGCTACTCAAAAGCACGACTAATTTAATTTACAGAGTTTATAAAAATAGGTTTAAATTGTTTAGTTAATGCTGGATATAAGAGATTTAAAATATGcgagtagtttttttttttcttttgattgtGGTCAGTAGTCTGATACCTGGCCATGCATGTGGCCTTCAAGCATTGTACATCACCACATGCTAAAACGCCACTGAACAAAAAACAATATTGCCAAATCGCAACCAATCACACCTCCTAAACTGCAGGTTGTCTTAAAGGTTTAACATTCACTCATGCAGCTAGCAGTTGGGCagctaaactttttttttttttttttgtccacatgCCAAAGTCTAAAAAGTGTCTGCTTAGAGATCCTGATATTATTTGGTTGGTTGTAAATCCTGAATTTTTGTTGTTCTATtaacaaaatctaaaataacAACAGAAAGTAAGTTATTTGGATTGTAAATGTCATGGACGGAAGGTATATCACTTAAGATGTATCACTGATTACTGTTACATTTAAGAGGAAACTGCTCTGACTACTCTGCTACCTGTGGTTAGCTAAAACTATCTAACCAGTATATGCAGAAAGAAAATCAGGCCTTTATTTTGCAGTACAGTAAGTACATATTGTTTTAGGTAAGGATGTGGTAATTAATTGTAAGTAGTTTTAGGTGTGTTTACATATAGAATTTTGAGGTACGTAATAATTTCTGAAAAAATGACCAGGTTTGTACAAGAGCACATGGTGCCACAATGCAATAGTTACTCAGattgtaattattttcatgCAGGACGTAATGATGTGGCGTAATCTTcgattaatatttttataagttgaatattttaagtgtgtagtgaataatgtgaaaaataccAGGTATACTTAAGCAAATAATGCTAAGTAACATTATAGTTGTATCAAACATGCGGAATAGAACACTTGGAGTATTTTTTTCGCATaagttacattattatatacttatatttcCAACTTCCAAAGGATGATCTAAGTATTACAATGTCATTATTGTACCGCAGCACAAAGTACTGTTGTACAAACGGAGTACTTCTCACACTAACTACTGTGTACTTAAAGATCCGGTATGCAAGGTTGTACCAGACATTACTGCATACTGACCTGCTAAATACTACgtagttactgtactgttaAATGAAGTATTACTCAAATGGTATGATTGTGTTCAACTgagtaaacaggaaatgaaattcATGCTAACTGGTAAAATGTTGAACTGCAGTATTAGGACTTTAAAGTGCATAGTTACAGTATGGTCTTTACAGATGAAAATATTAACCTGGTGGAGGCAgctacagtgtttaaaaaaaaaaaaaaagtttaaaaaaagtgtttttggtTTCACCATGCTCAGCAGTAGCATGTACTTTATTATATCAATGCTGTTCTTGACCTTCactttggaaaaataaacaatggaCATGTTGAGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72112 lncRNA upstream 4192 7786214 ~ 7786635 (+) True G60931
TU72113 lncRNA upstream 4192 7786267 ~ 7786635 (+) False G60931
TU71962 lncRNA upstream 88729 7611023 ~ 7702098 (+) True G60804
TU71966 lncRNA upstream 123608 7618473 ~ 7667219 (+) True G60807
TU71963 lncRNA upstream 173126 7593320 ~ 7617701 (+) False G60804
TU72309 lncRNA downstream 298910 8109478 ~ 8110443 (+) True G61096
TU72311 lncRNA downstream 307140 8117708 ~ 8118851 (+) True G61098
TU72411 lncRNA downstream 407526 8218094 ~ 8238482 (+) True G61162
TU72427 lncRNA downstream 481360 8291928 ~ 8326744 (+) True G61175
TU72429 lncRNA downstream 484803 8295371 ~ 8296101 (+) True G61176
XM_026913884.2 mRNA upstream 4651 7743431 ~ 7786176 (+) True LOC113526636
XM_026913622.2 mRNA upstream 115403 7543681 ~ 7675424 (+) False LOC113526517
XM_034303615.1 mRNA downstream 126946 7937514 ~ 8008440 (+) True cacna1eb
XM_026914074.2 mRNA downstream 201402 8011970 ~ 8014519 (+) True polr2d
XM_034303519.1 mRNA downstream 205845 8016413 ~ 8031250 (+) True abcf3
XM_026913930.2 mRNA downstream 223493 8034061 ~ 8053897 (+) False si:ch73-140j24.4
XM_034304005.1 mRNA downstream 223684 8034252 ~ 8053897 (+) True si:ch73-140j24.4
XR_004578001.1 other upstream 1194266 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 1360250 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 1647190 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 1651455 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 2194701 5580144 ~ 5596126 (+) False LOC113547291
XR_003402765.2 other downstream 245488 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 884784 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 1083902 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 1947892 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 1996753 9807321 ~ 9832280 (+) False gal3st3

Expression Profile