Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026914284.2 |
| length | 3623 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 8 |
| gene id | vangl2 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 8509133 ~ 8524288 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0060070 | canonical Wnt signaling pathway | biological_process |
| GO:0060071 | Wnt signaling pathway, planar cell polarity pathway | biological_process |
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0021535 | cell migration in hindbrain | biological_process |
| GO:0014812 | muscle cell migration | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0036342 | post-anal tail morphogenesis | biological_process |
| GO:0000902 | cell morphogenesis | biological_process |
| GO:0003401 | axis elongation | biological_process |
| GO:0055002 | striated muscle cell development | biological_process |
| GO:0035844 | cloaca development | biological_process |
| GO:0045813 | positive regulation of Wnt signaling pathway, calcium modulating pathway | biological_process |
| GO:0000132 | establishment of mitotic spindle orientation | biological_process |
| GO:0044782 | cilium organization | biological_process |
| GO:0060972 | left/right pattern formation | biological_process |
| GO:0001839 | neural plate morphogenesis | biological_process |
| GO:0001841 | neural tube formation | biological_process |
| GO:0097475 | motor neuron migration | biological_process |
| GO:0048048 | embryonic eye morphogenesis | biological_process |
| GO:0060027 | convergent extension involved in gastrulation | biological_process |
| GO:0030903 | notochord development | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| id | description |
|---|---|
| K04510 | VANGL; vang-like |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU72427 | lncRNA | upstream | 182389 | 8291928 ~ 8326744 (+) | True | G61175 |
| TU72429 | lncRNA | upstream | 213032 | 8295371 ~ 8296101 (+) | True | G61176 |
| TU72411 | lncRNA | upstream | 270651 | 8218094 ~ 8238482 (+) | True | G61162 |
| TU72311 | lncRNA | upstream | 390282 | 8117708 ~ 8118851 (+) | True | G61098 |
| TU72309 | lncRNA | upstream | 398690 | 8109478 ~ 8110443 (+) | True | G61096 |
| TU72653 | lncRNA | downstream | 200257 | 8724545 ~ 9037722 (+) | False | LOC113539869 |
| TU72660 | lncRNA | downstream | 219475 | 8743763 ~ 8824178 (+) | True | G61350 |
| TU72650 | lncRNA | downstream | 273184 | 8797472 ~ 8800324 (+) | True | G61347 |
| XR_004578048.1 | lncRNA | downstream | 280026 | 8804314 ~ 8806081 (+) | True | LOC117597155 |
| TU72656 | lncRNA | downstream | 288642 | 8812930 ~ 8813927 (+) | False | LOC113539869 |
| XM_034303539.1 | mRNA | upstream | 4480 | 8465305 ~ 8504653 (+) | True | arhgef11 |
| XM_026913781.2 | mRNA | upstream | 152603 | 8231180 ~ 8356530 (+) | True | LOC113526595 |
| XM_026913382.2 | mRNA | upstream | 405116 | 8102405 ~ 8104017 (+) | True | znf830 |
| XM_034304139.1 | mRNA | upstream | 408068 | 8088077 ~ 8101065 (+) | True | LOC113526329 |
| XM_034304095.1 | mRNA | downstream | 5900 | 8530188 ~ 8541291 (+) | True | si:cabz01074946.1 |
| XM_034304096.1 | mRNA | downstream | 5900 | 8530188 ~ 8541291 (+) | False | si:cabz01074946.1 |
| XM_034303874.1 | mRNA | downstream | 260657 | 8784945 ~ 9370485 (+) | True | LOC113539869 |
| XM_034303899.1 | mRNA | downstream | 310535 | 8834823 ~ 8836571 (+) | True | LOC117597150 |
| XM_034303887.1 | mRNA | downstream | 463441 | 8987729 ~ 8991452 (+) | True | LOC117597148 |
| XR_003402765.2 | other | upstream | 446294 | 8056056 ~ 8062839 (+) | False | LOC113526345 |
| XR_004578001.1 | other | upstream | 1912572 | 6595126 ~ 6596561 (+) | False | LOC117597080 |
| trnar-ucu_1 | other | upstream | 2078556 | 6430486 ~ 6430577 (+) | True | trnar-ucu_1 |
| trnat-ugu_2 | other | upstream | 2365496 | 6143565 ~ 6143637 (+) | False | trnat-ugu_2 |
| trnat-ugu_1 | other | upstream | 2369761 | 6139300 ~ 6139372 (+) | True | trnat-ugu_1 |
| XR_004578049.1 | other | downstream | 171064 | 8695352 ~ 8724440 (+) | True | LOC117597156 |
| TU72678 | other | downstream | 370182 | 8894470 ~ 8896729 (+) | True | G61359 |
| XR_004578067.1 | other | downstream | 1234172 | 9758460 ~ 9774049 (+) | False | rbm14b |
| XR_003403991.2 | other | downstream | 1283033 | 9807321 ~ 9832280 (+) | False | gal3st3 |
| XR_004578013.1 | other | downstream | 1336606 | 9860894 ~ 9881226 (+) | False | si:ch211-168d1.3 |
