RNA id: XM_026933044.2


Basic Information

Item Value
RNA id XM_026933044.2
length 1675
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC113538167
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11342706 ~ 11347588 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGATGGAGAGTTGTGATAACTCAGGAGGGATTAATCTAGTGTGTGAGTCCAGAGGCTGGAAACCTGAACCTGAGGTTCTGTGGCTGGACAGAGAAGGAGCCACTCTGCCTGCTgaagatacacagatacacagagacactgagggCTTCAGTGTGAAATGCCGCATCACTGTTTATGATCATAGCGCCTCCAACAGATTTTACTGCAGACTtcaacaaaaacatcacatgatGGAGGCAGAGaGCGTGGCCGTCAGCACTGGAACAGGCGAGACTGATTTTGAGAGACTCGTTGCTATTTTGGCAGCTGTGCCACAGATACAATACATTTGTGTCGACGTAGCGAATGGATATTCAGAACACTTTGTGCATTTTGTCAAGGACGTGCGGCAGAGGTTCCCTTCACACACCATCATGGCTGGTAATGTGGTCACGGGAGAGATGGTGGAGGAGCTGATTCTCGCTGGTGCCGACATCATTAAAGTGGGCATCGGTCCAGGTTCAGTGTTTACAACCCGTAAGAAGACAGGTGTGGGCTACCCTCAGCTGAGTGCTGTAATTGAGTGTGCTGATGCTGCACATGGCCTGGATGGACACATCATCTCTGATGGAGCATGTGTGATTATGGCTGCAACTGAGGAATTTCAAGTGGGCAGGTTGCCATGCACAGGCTTTGTATATCTAGGTGCGGGAGCGGACTTCGTGATGCTGGGTGGAATGTTGGCAGGTCACTCTGAGAGCGGGGGTGAGACCATTGAGAAAAACGGCAAAAAGTACAAACTGTTCTACGGCATGAGCTCTGATACGGCCATGAAGAAGCACGCAGGAGGAGTAGCAGAGTACAGGGCGTCTGAGGGGAAGACAGTGGAGGTGCCCTATAAAGGGCCAGTGGAGGTCACTGTGAAGGACGGACTGGGTGGAGTTCGCTCCACCTGCAGATATGTAGGAGCTGCTAAGCTGAAGGAGCTGAGTCATCGTACCACCTTCATTAGAGTGACTCAGCAACTAAACACTGTGTTTGGAAACAATGACTAAGACATCGCTATTGCTCATGAGTGCCAATCTGGTCTGCCAGatttactgcattagttaaAGAGCTAAACTATGTCAGATTCATGCAAAGGTTtagaattttgttttttgtctgacattcacaaacaaaatgcacacaGCACCACACAGTGATAAACCTCACAGCTTTTCCTGCAGCAGTGTTATGGTTGTGGCTAACATGGCTAAGAGAAATTCACCTGCTTAGTCTTCATATAAAGACTTAACTGTACAGTTTGGCTTGAAAATGTCTTGAAAATTTTGTAGTAGTGTTTCTTGAATTTAATTCTCCAGGAAGTATTTAAGATggaaagtctctctctctctctctcttcatatcCCAGGCTTCACTGCCCTTAATTCATTGACACTGTGTCTTGACAACAAGCCAAATACTGTTAAAAAGCCTTGtgatttccatttattttagtAACTACTTTACTAATGCACTGTTTTATaggtttttcatgtttttgaaaaaaaattatctgcATGAACAGTTTTCCTCAAACTGGACCAAAACTATTACTACAGCAATTATTGCCATTCCACGTCATTTAGTATAATTAATATCTTAGAAATGTCATCTATGCACTGATGAATAAAGGAGATGCATTTCACGTAA

Function

GO:

id name namespace
GO:0009117 nucleotide metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:1902560 GMP reductase complex cellular_component
GO:0003920 GMP reductase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74365 lncRNA downstream 29090 11311573 ~ 11313616 (-) False LOC113538166
XR_004577933.1 lncRNA downstream 259694 11080531 ~ 11083012 (-) True LOC117596980
TU74080 lncRNA downstream 268003 11042345 ~ 11074703 (-) True G62504
TU74041 lncRNA downstream 388962 10926840 ~ 10953744 (-) True G62469
TU73670 lncRNA downstream 770346 10572155 ~ 10572360 (-) True G62183
XR_004577938.1 lncRNA upstream 3109 11350697 ~ 11358554 (-) True LOC117596984
TU74374 lncRNA upstream 17667 11365255 ~ 11366181 (-) True G62735
TU74413 lncRNA upstream 54681 11402269 ~ 11403021 (-) False si:dkey-183c6.7
TU74373 lncRNA upstream 93529 11441117 ~ 11471047 (-) True G62734
TU74432 lncRNA upstream 103850 11451438 ~ 11547288 (-) True G62791
XM_034303832.1 mRNA downstream 1523 11320035 ~ 11341183 (-) True LOC117597109
XM_034303258.1 mRNA downstream 30836 11286449 ~ 11311870 (-) True LOC113538166
XM_034303257.1 mRNA downstream 31913 11286449 ~ 11310793 (-) False LOC113538166
XM_034303259.1 mRNA downstream 31957 11286449 ~ 11310749 (-) False LOC113538166
XM_034303237.1 mRNA downstream 63458 11266384 ~ 11279248 (-) False LOC113540328
XM_034303276.1 mRNA upstream 30241 11377829 ~ 11381919 (-) True ccdc166
XM_026936784.2 mRNA upstream 54439 11402027 ~ 11415897 (-) True si:dkey-183c6.7
XM_026936779.2 mRNA upstream 78710 11426298 ~ 11432252 (-) False syt4
XM_026936778.2 mRNA upstream 78710 11426298 ~ 11432252 (-) True syt4
XM_034303241.1 mRNA upstream 162143 11509731 ~ 11519651 (-) False LOC113540344
XR_003404120.1 other downstream 128284 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 129772 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 133873 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 160393 11177711 ~ 11182313 (-) False mrpl52
TU73964 other downstream 432707 10907127 ~ 10909999 (-) False nedd8
TU74378 other upstream 186176 11533764 ~ 11535013 (-) False LOC117597110
TU74889 other upstream 899686 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 924630 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 924784 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 924784 12272372 ~ 12277669 (-) False LOC113539775

Expression Profile