RNA id: XM_026935801.2


Basic Information

Item Value
RNA id XM_026935801.2
length 4396
RNA type mRNA
GC content 0.44
exon number 9
gene id zgc:109889
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11834368 ~ 11860113 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGACGCTGCCAAggaaacacacatgcagatacagtcagcatcggacacacacacacacacacacacacagctccaaacCTCAAACACACTGTCAAATGACTGCTATTCACATTAGCTTAATGCGAAAACCGTGCAGCCGGGGACTACAGGAAGCtatgtgaggggaaaaaagacaaaagaagaagaagaagaagaagaagaaggagtcGTAGTGAAAAGTGTGAGATAAGTCAGCCTAACGTCTGCAGCGTGCAGTATATCGCCATGCCACTGGTAAAGAGGAGCATTGAGCCCAGGCACCTGTGCCGGGGTGCTCTACCTGACCGAGTCTCCAGTGAGCTTGAGTGTGTCACCAACAGCACTCTGGCAGCCGTCATCAAACAGCTTGGTAGCCTCAGTCGCCATGCAGAAGACGTCTTCGGGGAGCTGTTTAAAGAAGCGAACAGTTTCTGCTTGCGCATGAGTCACCTGCAGGAGCGCGTGGACCTGCTGGCTGTTAAAGTCACCCAGTTGGATTCCACTGTGGAAGAAGtctcacTGCAAGACATCAACATGAGGAAGGCGTTTAAGAGCTCCACCACTCAGGATCAGCAGGTGGTGTCACGTGCCTCCATCCCCAACCCTGTTATGGAGATCTATCAGTGTGGAGACAAGCCTCCGCCGCTCAATATCCTCACCCCATACAGaGATGATAAGAAGGACGCTCTGAAGTTTTACACAGACCCATCATACTTCTTCAACCTCTGGAAGGAGAAAATGCTACAAGCCACAGAGGAcaagaggaaagagaagagacgccagaagGAGCAGCAGAAGCAGGTGGAGGAACCAGGTCGTGAGGTGAAGAAGGTTCGGAAAGCTCGGAACCGCAGGCAGGAATGGAACGTGCTGGCCTATGACAAAGAATTTCGCCCCGATGCCCGCTTTACACCCTCCCCATACCACGGCATGTCATCAGAGGGCTCACTGTCACCTGACAACAGGTCAGTGTTATCAGACGTGGGTGAGCACTCGTACCCTGGCAGCCCAAACCGGcctgcacaacacacaccaccatgcAGCGCTCTCTCCACCACAGATGGTAAGGAGCTCATCCTCACTCCCTCCCAGACCCAGACACTGCAGCGAGGCTACCGACCCACTGGCACCCTGTCCACTCCAGCTGGGAGAGACACGCTGGGTAGAATCCAGCCCTTACACACAACCCCGCCCACTGACCCCACTGTCAACGGCCCTCGCCCAGCTCAGGCTAAAGACtacagCAGTCAACAGTCCCAGCACTCCGAGTTTTTCAtccctcctgctcctcctcctccacctcctcctctcaTCCCATCAGCTCAGACAGCCTTTGACAGCCCGACtgctccctcctcctcctcttcctcctcccttCCTGCCAGCACCATGGCCTCCCTGTCCCGTCCCTACGGCTCTTCTCCTCCTGCagctcctccaccacctccatcCGGacccccgacacacacacacccactcacacacaaccTGCCGCCAGCCCCTGCTGAGGTGGTAGCCCCCAGGAAGGCTCAGGTGCCTCTGGTCCCCATGAGTGACGCCAGGAGTGACCTGCTAGCGGCCATACGCCgagGAATCCAGTTGAGGAAAGTGCAGGAGCAGAGGGAGCTGGAGGCTAAGAAGGAGCCTGTGGGCAATGATGTAGCCACAATTCTGTCACGCCGCATTGCTGTGGAGTACAGCGAATCAGATGAGGACTCTGAGCTGGACGAAAACCGAGTGGTCTGATTGAAGGAGAGAGCAGGATGCTAGATGAGATAAGGACAGAAAAAGGCAAACAGAGATGAGATGTTCGGAAGAGCACAAGTAATCCTGCTGAGGGCTACTTTTCTAAAAGCCTGACTGAAGCCCCGATTCTGTGTCCCCAGAGACCAGAGGCTGGAGAAACTTATAGCTGTACATGAGAACTCCCACAGTAAAAGATAGTCCAggttttgcatgtttataggTTTATAAATTGcaatttaaaagtttatttcatATCTGAGGCAGGTGTTCAAAGAGTTGGCTAGACACAGGGTTTAGGAAATGTAATATAAGCACAAAATTGCAGTAAGAGTGAGATGAAATTTTTAAAACCTGTTGGCTCACAAGCCAAATATGGCTGTTTTTGGGAATCCATATTAGGCAACAAAACAAGCTGaagaaattaataaagtaatcaaattttaaatagtttaaacaTGACTTTAAGTAAATAGGTCTAACAATATTGTTAAAAACGTTTCTAACATCATTTGCTAACATTAGAGGCAAGACATCTCTCTAGTCTCTAAATTCTATTGGACAGTATTGCTGAGTTTGCTATTGGACAGTTGCTGAGTGCAGGTCAAATAGTTAAAGCAATACAAAGCTTACAAGAAGTAAAAACAAGACTGTAAGCTAATGTTAAGTactattgacaaaaaaaaaaagacaatgtaTATCATTATTTCTAGCCTGAATGGACTTTAAAATCGCATTTACTGAAAAATCAGGGTCCATCATATACTTAACTTGCAAATGTAAAGCATCACTTATATATTCTTGTTTATGGTATTTGTGGCTAAACGATCACTATGTGGTGTAGTTTATGTAACTGTTAGTGGTGTGCATCCAGGCTGCGAGCCCATGGGAGCCAACAAAAAAATTGCACGAGAGCGAcaggcagtcagatatgaagtttACAGAACAAAGGAAGGCTATGTACATTCACATGGGGACGTATCGGACATGGCAGGTTGTTTGTGCAGCACTGCGCAATGTGTATAACATCTTCTGTAAAtgctttattctttataattactaatttgtttatattttggaaatagAACCAAGTTCATTAGAAAGTGTTGAGGCAGGtacaaataacaataataactgtggcagtgggcaggattggtcagaaatcCTTcgggagtgggattaaaaaataatccaaCACCTCTAGCAGCTGGATTAAAGAAGAAATCTGAAATGCAGCTATCTTATTGTCACCTAATGGACGTTGGTAGTACCTATCAACAATGAGGTGTGATCCATATGTTGCTGCCAAGAAActgaacacattttaattttttaaaatcttttatttatgttCTGTGGCTCTACCAGCTGAAAAGGTAACGAGTCCCTGCTCTGGCTGTAAAGAGATTATTCAGCTTTTTCACCACAGTTTACATTACTGTGTGTCCAGCAGGATGAAGCCCACACACTATGACTCTTTCGCTATAAATCACGCTCCATGTGCTCCTGCCATCTGCCAAGTTCACAGcttctcacactcactctctttctcattccctatcacttttttttacttgctcATTTGTCATGTCTGTAGAAAGGGCAGCTGTTAGCCAGTTGTCCATGGTGTGACTTCACATGGTTAGAAGCTCATACCTggacacattcacacagacatAAAATGTGAGttgttcaaatcccagctgtTCCCACGACGTACAGTGTAAAGTGCCAGTGCAGCAATGTGAAGGATATAACTGTACATATGGTATATTTTACTGTGTTCATTTAGTAagatgtaataatataattatcttTCTTTATGTCCGCAAAGGAAAGgatatgatatactgtatcatAAAGACATTAAGATGGATTACACATTTCTTAAGATGCCGCCTTTAAAATGTTGCTTATTTTCTGAAATAACATAATGTcgcatatttgatttataattaaCTAAGTCTGGAGTGTTTTAtgagttttgtttttgaaatactcTGAGTAACTTCAGTAGATTTGCAGTGAATAGTGTGGGTTAATAATCTTCTTTCTCTTCACACAGAAACATGTTAAACACAGAGTTCATCCCTGAAAGGTGTTATGGGTCCCACTGTCCCTAGTAACataagaagaaagaaggatATGACAGTTTTATTAAACACGTCTCCACCCAGACTCACAAATAGAAATAAGTCAGAAGTAGTTCCATAGTGTTTGGTTTGGGAGAGTTCTTTGCCTTttttgagagtttttttttttctctgtggtcttttatttccttttatttgtgtgttttagccACTAATTTGTCCAAAGTAAAAGCACTTAAATAttttagcttatttttttattcaaaagttTATTTGTGCCACTGATAGCTGCACAAAAAGGAAGTGCcaggttttaaacattttggaaTATGATCTGTAggttgtctgtttttttttttttttttttgctgttgttgtatATAACGTCATATAAAAATTCGCTAAGCCTGCTTGTAAAGTAATCTGAGTAAGAAATCGGAGTGTCTAAGTAAAAGAAAGCAagcattcagtgtgtgtttaagaagAAGCTGTAGGCCAGTACATGCATGTCCCAATGGCCAATAAAAGCCCACTGATAGAAA

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74467 lncRNA downstream 128713 11698687 ~ 11705655 (-) True G62818
TU74465 lncRNA downstream 128911 11662998 ~ 11705457 (-) True G62817
TU74674 lncRNA upstream 7337 11867450 ~ 11867703 (-) True G63015
TU74690 lncRNA upstream 37732 11897845 ~ 11898101 (-) True G63031
TU74670 lncRNA upstream 76658 11936771 ~ 11966896 (-) False htr2cl1
TU74717 lncRNA upstream 112598 11972711 ~ 11972947 (-) True G63058
TU74721 lncRNA upstream 143894 12004007 ~ 12004319 (-) True G63062
XM_034303303.1 mRNA downstream 37768 11717345 ~ 11796600 (-) False si:dkey-172j4.3
XM_034303300.1 mRNA downstream 37768 11717345 ~ 11796600 (-) True si:dkey-172j4.3
XM_034303302.1 mRNA downstream 37768 11719062 ~ 11796600 (-) False si:dkey-172j4.3
XM_034303301.1 mRNA downstream 82655 11717345 ~ 11751713 (-) False si:dkey-172j4.3
XM_034303299.1 mRNA downstream 90830 11717345 ~ 11743538 (-) False si:dkey-172j4.3
XM_034303931.1 mRNA upstream 2512 11862625 ~ 11966903 (-) False htr2cl1
XM_034303930.1 mRNA upstream 2512 11862625 ~ 11966903 (-) False htr2cl1
XM_026937220.2 mRNA upstream 2512 11862625 ~ 11966903 (-) False htr2cl1
XM_026937221.2 mRNA upstream 2512 11862625 ~ 11944014 (-) True htr2cl1
XM_026937219.2 mRNA upstream 2512 11862625 ~ 11944013 (-) False htr2cl1
TU74378 other downstream 299355 11533764 ~ 11535013 (-) False LOC117597110
XR_003404120.1 other downstream 619946 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 621434 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 625535 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 652055 11177711 ~ 11182313 (-) False mrpl52
TU74889 other upstream 387161 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 412105 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 412259 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 412259 12272372 ~ 12277669 (-) False LOC113539775
XR_003404098.1 other upstream 1344160 13204273 ~ 13204462 (-) True LOC113540725

Expression Profile