RNA id: XM_026935807.2


Basic Information

Item Value
RNA id XM_026935807.2
length 3576
RNA type mRNA
GC content 0.46
exon number 11
gene id abi1b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27495848 ~ 27508199 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGTGAATGAAAGAAGGGGCGCAGGCAGAGTGAGGAGGAGGCTTTAGTAATGCAGAGGGGAGTAAAATGGCAGAGCTACAAATGCTGTTAGAGGAAGAAATTCCGGCTGGGAAGAGAGCTTTACTCGAGAGCTACCAGAATCTCTCCAGAGTCGCGGAATACTGCGAGAATAATTATGTACAGGCTCAGGATAAAAAGAAGGCCTTGGAGGAGACTAAAGCGTACACCACCCAGTCGCTGGCCAGCGTGGCGTATCAGATCAACGCTCTGGCCAACAACGTGCTGCAGCTGCTGGACATCCAGGCATCTCAGCTGCGCCGCATGGAGTCGTCCGTCAATCATATCTCCCAGACCGTGGACATCCACAAAGAAAAGGTCGCGCGGCGAGAGATCGGGATTTTGACCACCAACAAAAACACGTCACGGACGCATAAAATCATCGCCCCTGGAAACATGGAGCGGCCGGTGCGCTATATCAGGAAGCCGATTGACTACACGCTGCTGGACGATGTGGGGCACGGCGTCAAGTGGCTAAAAGCGAAGCAAGGGAACAGTCAGCCTGCCAGGTCCGGGGGCGGGACTTTATCAAGGACCAATCCACCGACGCAGAAGCCACCAAGCCCACCCATGGCAGGGCGGGGCACCCTGGGgagaaaCACACCCTATAAGACTTTAGAGCCTGTGAAACCTCCAGTGGTGCCAAACGACTACATGACGAGTCCGGCGAGGCTCGGTGGTCAGAGCAGCCCAGGACGCACGGCATCGGTCAACCAGAGACCCCGAACACACAGTGGAAGCAGTGGTGGTAGCGGCGGACGGGAGAACAGCGGGAACAGCGTGGGAATTCCTCTGGCTGTTCCAACACCCTCCCCTCCTAGCATGGCACCAGTGGTACCTCCAGGTCCAGGTCTGGGTCCTGTTCCGATGTCTCAGTTCGGCACTATTTCTCGGCAGATCTCGAGGCACAGCTCCTCCAGCGCCTCGTCCTCTGCCTCCATGGTGTCGGCGACTGGTACGTACCGCCGCGCCCCGTCCAGCTCGTCCCAGTTCTCCGTGCCCCAGTCGCACCTTAATGGCGGTCCCACGTACCCCCAAAACCCGGCTCCGGTCTCTGTCGCCCCGCCGCCTCCTCCTGTGGCGCAGCTCACACCCCAAATTCCTCTCACTGGATTTGTGGCCCGAGTTCAGGAGAAcaTTTCAGATAGCCCCTcccctcctccaccaccactcCCCGAAGACACACCCATGTTTGAGGAAGCGGCTCCGCCCCCTCCCCCGCCCCCCGTTGACTATGAAGAAGAGGATGCTGCGCTAGTGCACTACAACGACCCCTACGCAGATGGAGACCCTCACTGGGCCCCCAAGTCCTACATAGAAAAGGTGGTGGCCATCTACGACTACACCAAGGACAAGGATGACGAGCTGTCCTTCATGGAAGGCGCCATAATCTACATCATCAAGAAAAATGACGACGGCTGGTTTGAGGGCGTGTGCAACGGCGTCACCGGACTGTTTCCCGGCAACTACGTGGAGTCCATCATGCACTATGCTGACTAACGCTAACTTACGAATGTTTTCATCTGACCTATTTAAGTATTTATGATGTGCAGTGTATTGAGAAAGTGTTCGGTTCTTCCTGATTCAGGTTTTTGGACGTGTtttgtacatacagtactgtatgaAACCTGTCGGTTGTGACTAGTGCGTGTTATTGTGCGTGTTTCGTCAGCGTAAAAAAACTGTGGTAGTTTTTCTTTTAACGTACTGCCAAACTCTTCCTTTACATCAGGGAAGACGTGGTTCAATGTCGTGATTTACAGTATAATCTGGCTGATACACCAGGtcatttttattccactttGCCTGCAGTGTTAGCCTACGTTGCATTTTAATTCCATGTATGTTGCTATCGTGAGGCCGTTGCCTTAACATTTCATAATTATATCATTCGTTTTGCTATGTTCAAACTGGGTTCCATGTAGCCAGCTTCCCAACAAGCCAGGTACTTCATCTGTACTACATTTGCTAGCTAATGTAACTAAATTCCTTTACTGCACTAGGTAGGTAACAAGGCAGGTTGTTGGCCAGCAAAGCTAGCTAGTTTCCCAATTGATATgaaggaaaatgtgtgtgataattCTCAAAGGaaatttgctagctagttagggCTAAGCAGCTCTTTTCTGGCTGGGGCAGAGACAATTTCAAGGGCAGAAATTTGGCAGTTTAAGGCTAATCTTGCAAGCCAGACTTTTAGCCTGATACATTTTGTTACCAACCAACCATATTAACACACTAATAACTCTTAAAGACATGATGccatgaacattttttaaatccagtgaCTAtatgaactgtatagtcagaaaagtgtaaaataaaatatgagatGCTACATGGCAAATGAATTGAGCAATGTGTCCTTAAAATTATAAGATATTACAGGCatagaaatacatttaaaagctGAATCTTTAATACAGTTGTGCTTACTAGTAAGCTAACTAAAATAGGTCAAAATTTGCTATTTACTATTGCCATCAGGTGCTTCATGGTTTGTAGGtagctttattttaatgtaacactacTGCTAGCAGCTAGCAACTCTGTTGCGTAGATTTATGTTGTGCTTAGTCTGGTTACACACTTTAAATGTTCCTGTTCGAGTACCATATGGCTAATTCAATCAGACAGCAGTCAAACAGTGGCATTGTTCATTTAGGAgacattttgtaaaacaaaaatttgAAGTATTAAACTCTGTTCATTCCATGGGGTGGATTCTGCTAATCTTCACCCCTCAGTAACAATCATCCCAAATTTTTATTAGTCGTTTTGCCTCATTTGCACCCGGGTGAAAACACAAACCTTGTGAGGGAACCTGTCCAATTGTTTACACAATATAAgagtctaatgttagctaggttTCAAACAACTCTGGTTAATGGTTTACACAATATTGTAGTTAGTGTGATGCTAGCTACCTTGACTACAGTTTTATACACATAATAGCctcatgttagctagtttgATAGCAACTTTGACTACACAGTGTAATAATTAGCCAAATATTAGATGGCTTAGCTACTGTTTTACAccattagccagctagcttgcTGGTGTTTGTTGTTGCATCATACAGTGCTTAGCCTAACATTAGCTAGGTAGTAAAGTTATATAGCTACTACTGAAGGGTTAATACAGTATAAGCTAAGCTATCTACTTAGCAGTCTAGTGTAGCTAATAATGATGATTCTGTGTTTTTGGTGGTAAACTCTGTTTTCACTCAGGTGCAAATAGTATTTATTCTCAGTTATAAGAAAGCACAGCATGGATTTTTAGACTGTCATTGAAATAACCGATGACATTGAAGTTCAGTttggttttatattaatttaatagaaTGAAATATCCATGAGAATGTGATTCACTCAGTGCTGTGTGAAACATGACCACACGGTGTTAGCTACTCATCACCTTCGCTATTAGCTTCTCTCTCTTCACCTTGTAcataaataaaacctgtttttCTCAGTTGATGTACAGCGGTTTTTATATTAAAGTACTGTCCGGTA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K23649 ABI1; abl interactor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404004.2 lncRNA upstream 8137 27483820 ~ 27487711 (+) True LOC113540179
XR_003404003.2 lncRNA upstream 8137 27483831 ~ 27487711 (+) False LOC113540179
TU85362 lncRNA upstream 35651 27459670 ~ 27460197 (+) True G72012
TU85353 lncRNA upstream 66626 27428419 ~ 27429222 (+) True G72005
TU85334 lncRNA upstream 89450 27405579 ~ 27406398 (+) False sgip1b
TU85494 lncRNA downstream 44928 27553127 ~ 27555706 (+) True G72118
XR_003404048.2 lncRNA downstream 47886 27556085 ~ 27559110 (+) False LOC113540592
TU85491 lncRNA downstream 48005 27556204 ~ 27559102 (+) False LOC113540592
TU85492 lncRNA downstream 48005 27556204 ~ 27559427 (+) True LOC113540592
TU85493 lncRNA downstream 48005 27556204 ~ 27559013 (+) False LOC113540592
XM_026936474.2 mRNA upstream 18175 27468048 ~ 27477673 (+) False zgc:55943
XM_034303667.1 mRNA upstream 18175 27468283 ~ 27477673 (+) True zgc:55943
XM_026936475.2 mRNA upstream 18175 27468283 ~ 27477673 (+) False zgc:55943
XM_026937314.2 mRNA upstream 29343 27460268 ~ 27466505 (+) True imp3
XM_026936528.2 mRNA upstream 48600 27441509 ~ 27447248 (+) True fam78ba
XM_026936183.2 mRNA downstream 1651 27509850 ~ 27517204 (+) True si:ch211-252f13.5
XM_034303993.1 mRNA downstream 26477 27534676 ~ 27546129 (+) True ap2m1a
XM_034304070.1 mRNA downstream 53950 27562149 ~ 27582022 (+) True dvl3a
XM_026936880.2 mRNA downstream 120249 27628448 ~ 27639961 (+) True prtfdc1b
XM_034303530.1 mRNA downstream 140615 27648814 ~ 27698656 (+) True arhgap21b
trnat-ugu_5 other upstream 6523 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404108.2 other upstream 382594 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 831766 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 1120069 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 1131615 26353189 ~ 26364233 (+) False LOC117597079
XR_003404069.1 other downstream 48318 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 49566 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 112406 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 113112 27621311 ~ 27621383 (+) True trnat-ugu_8
TU86406 other downstream 1366157 28874356 ~ 28912104 (+) True G72873

Expression Profile