RNA id: XM_026935810.2


Basic Information

Item Value
RNA id XM_026935810.2
length 3404
RNA type mRNA
GC content 0.44
exon number 13
gene id mllt3
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20221888 ~ 20271231 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGCATGCgtctcacttcacttcactcctAGAAACTCGGGCTGGGGCTCAATTAAGAGACCATGTCCGCCATCGGCCGTCCGCAGTCCGTGCTATCCTTATTTAAACTAAATTCTCCATGAAATAGCATTATCCCGTGGCCTCGAGAATGGCCAGCTCGGGTGCTGTTCAGGTGAAGCTGGAGCTCGGGCACCGCGCTCAGGTCCGGAAGAAACCCACCGCTGAAGGCTTCACACACGACTGGATGGTGTTTGTCCGCGGGCCGGAGCACACCAACATCCAGCACTTTGTGGAGAAAGTAGTGTTTCATCTGCATGAAAGTTTCCCCAGACCAAAAAGAGTGTGCAAGGATCCACCATATAAAGTGGAAGAGTCTGGATACGCTGGCTTTATCCTGCCTATTGAAGTGTACTTCCGAAATAAGGAGGAGCCGAAAAAAGTGCGCTTCGACTACGATCTGTTCCTGCATTTGGAGGGTCATCCCCCTGTCAATCACCTGCGCTGTGAGAAACTCACCTTCAACAACCCGACAGAGGAGTTCCGCAGGAAGCTGCTAAAGGCCGGAGGGCAACGAGATCCTCACAAAAGAAGTTCAGAAGACTCTAAAGTGATGGTCATGCAGGAAGGCTCCACGTCTCTGTTCGGTCAGCACCTTAAGCTGCCCACTTTACCCAGCAGCTCACTGACACTGAACTTCTCTGATGGCAAAAAGAACAAGTCCTTTTCAGGAGCAAAGGACGGGTCTAAAAGCAGTAGTGCcctcaccatcaccaccaccaacaacagcatcagcagcagctcACTCAAGCTCCACAAGCCATCCAAGGAGCACAAGGACAAGCCTTCCAAAGACTCAAAAGAGTCCAAAAGTGCCTTCAGAGACTTCAGCAGGGACTCGGGCAAAGTCTCCAAAGACTCCTTGAAGAAACCCAAAGAGAACCAGCCGCTGCGTGATGAGCAGCCCATCCCTAAGATGGGTTTCAAAGAGCCCAAGGCCATATCTAAGGAACACCGGGCAACTGAGGTTAGCTTCTCGAGCTTGGGCCAAAATAAACGAAGGCCCTCAATGGACGATGAAGCCCACATTACCAAAAAACGGAAAGGAAGTTTTTCAGAGTCATCGCAGAAGCTTCAATCCGGTTCTAGCTTGGTCCAGCCTCACCACTCGGATAAAAAGGCTCTAAAGGACAAATCGCAGGTCCGGCATGCCAAGTTAAGGGATAATGAGCTGTCAGAGAGAAGGAAGGTGTCCACATTGCCTCCTTTTCAGGATGTGGTGGACCCAAATGACTCTGATATGGATGACAACATTTCTGCTAAATACGACTCAGAACAGCCCAGTCCtgccagctccagctccagttCGAGTTCAGGATACAGACCGACACACAAGCGACAAGTGCTGGGTCCTTTACAGACGATAATTCCAGATTTGCACTCAGATGACAATGAAGACGAGtcggaggaggaagaggacaaCGACATGGACTCGGACATGGAGCgtcccttacacacacacatgacgcATCGCCATCGCAGGGTGAGTTTGAGTGACGGCAGTGACAGTGAGAATAGCTCCACCTCCTCACCACTCCCGCACAACGAGGCCCCGCCTCTTCTGAAGGCTAGCAATAATCAGATTCTAGAAGTGAAGAGTCCCATGAAGCAGACAAAAGTGGATAAAAACAAGAATATCGACTGTGATAAGgCATACTTGGATGAACTGGTGGAGCTCCATAGAAGACTAATGGCACTGAGAGAGAGGCACATATTACAGCAGATTGTAAACCTCATCGAAGAAACTGGACATTTTCACATCACAAACACAACCTTTGACTTTGACCTTTGCTCCTTGGACAAAACCACGGTTCGAAAGCTGCAGAGCTATCTAGAAACTTCTGGAACATCTTGAAGACGTGTGCAGCTGGCTGCCATGAGCAGGAACACCAGACCTCCTAACTGTCCTCCTGATTTTGTCTCAATCAGCTTGTGGCAATGTTATGGAATCAGCTTCATCGAGAGGTCCTGGAgctcctttcttctctctgtgtgcCTCAGAGATGGATGTGAGATTCTTCCTGTCCACCAGGACTTCACCTGAAAAGCCTTGAAAAGTCCAACATTGCCAAAAAGGGAATAAACAAGTTCATgcgccaaaaaaaaacaatgtgcatATTGTTACGATGTATGAATGATGTTTGGTTCTGTTCTTTGTGACGAATGCATGTCTAAACACTGCCTTACACCATTGTCTATTTATTGAGTGTGagtttcaagtgtgtgtgtgtgtgcgtgtaagaGCAAATGATATTAAACTCGTGCAAGCACTTGGGCACAGTCATGTCATTGGTGTTTTAAGGTGGTGAAGTGTTAGATTTTCCTCACCAAATCTAACAATTACATCCAGTGTGAAAGGAAGAACAAATTATCcatgaaatatttacaagaCTGTTTGGACATTTAAAGGCACTGTAGAAATTGTGGTTTTAGAGGAAAGCACCAGTCTTGGTCTTACTGCTGTTTCCAGTAAAAGCAATGTCATGAGACAAAACTTTCATGGTGAGGATCAAatactatttttaaatgattgcaCATGAAGGCAGTACCAACATTGGAATAATTTAGGAATGTCACCTTTTGTACTGGTCAGGACTGAGCTAAAATAATGATTGATTTTAAGGCCAAATATGCTTACATAGTAAGAATATGTCTCAGTTGAAAGCTGTCTTATTGAATCtgttgatgttatttatttcattggGACCACAATCGCTTTGCTTGTGTGTTGGCTGTCTCTAAACCAGTGGGAACTGGTTATGGGTCTTTTGGAAATTTTAGTTTgtcagaattcttttttttttttttttcattcaaagtTTACTCTTCAGGTCCTCTGAACTCTTCTTTTATAGACAGCTTGATCAATTGCTAGATGTCATTGTGGGCAGATTGTACAGTTGAGCTGTAGCCATGATGGTTGAGTTATGCCTTAAGGCAAGACCAGTATCATTTAGATGGGTTATTTTAAATCACGTGAATACATCTGTAAGAGCTACAGATTACTTTGGTGACCTGACAGGGAGGGGGCTGAATTATTGgcactgtgtgtatttaaaaaaaaaaaaaaaaaaaaaaaagtgtacgaATTTTTCAtaattgcatttttgtattgtgtttgtttttgaatgaaATCAAACCTTGtatactttttttctgtctggaTTTCCCTGATTTGAGTTTCTCAACCCAAAGAACCTTTAGTTTAGCTAtcattatataatgtttatatgtgtgtataaactTTATATGTGATAAAAACTGAATATCTTTCCTTTCTTGGAAGGTACTGACCTGATTCCagctgaacatttttttatccTAATATAAAATCCAAACAGTCTGCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80206 lncRNA upstream 160767 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 160894 20066030 ~ 20067038 (+) False dock11
TU80167 lncRNA upstream 262044 19962599 ~ 19965888 (+) True G67642
TU80168 lncRNA upstream 262846 19962599 ~ 19965086 (+) False G67642
TU80111 lncRNA upstream 310763 19916600 ~ 19917169 (+) True G67595
TU80554 lncRNA downstream 209369 20480600 ~ 20481755 (+) True G67958
TU80678 lncRNA downstream 364117 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 421032 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 421032 20692263 ~ 20693111 (+) True G68070
TU80850 lncRNA downstream 593647 20864878 ~ 20895955 (+) True G68192
XM_034303348.1 mRNA upstream 61683 20159312 ~ 20166249 (+) False hacd4
XM_026936479.2 mRNA upstream 61683 20159320 ~ 20166249 (+) True hacd4
XM_026936481.2 mRNA upstream 61683 20159613 ~ 20166249 (+) False hacd4
XM_034303347.1 mRNA upstream 61683 20159743 ~ 20166249 (+) False hacd4
XM_026935939.2 mRNA upstream 73155 20147824 ~ 20154777 (+) True fcer1g
XM_026936145.2 mRNA downstream 18566 20289797 ~ 20297146 (+) True c4h4orf54
XM_026936923.2 mRNA downstream 35899 20307130 ~ 20314066 (+) True trmt10a
XM_026936924.2 mRNA downstream 36038 20307269 ~ 20314066 (+) False trmt10a
XM_026936084.2 mRNA downstream 47206 20318437 ~ 20332200 (+) True nectin4a
XM_026937181.2 mRNA downstream 62447 20333678 ~ 20345681 (+) False coro1b
TU80337 other upstream 73161 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 126834 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 399042 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 399550 19828311 ~ 19828382 (+) True trnah-gug_4
TU79253 other upstream 1369280 18856456 ~ 18858652 (+) True G66864
trnaa-cgc other downstream 81183 20352414 ~ 20352485 (+) True trnaa-cgc
TU80896 other downstream 749027 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 1056115 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 1357845 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 1357845 21629076 ~ 21639890 (+) False mettl4

Expression Profile