RNA id: XM_026935821.2


Basic Information

Item Value
RNA id XM_026935821.2
length 1142
RNA type mRNA
GC content 0.40
exon number 6
gene id cacybp
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25954956 ~ 25964158 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGGAAGTATAGCAGCAGTGCAGAATCTTTCTAGAAAAGCGGCTACACATGCGTATACTGTGGAGTCTGAGGTATATGAAACTGCTTGTTGTAGTGTGAATATTAACACCTTATTTGTGTTTATCCGATAAAATACATTGAAGGAAACACTTATTTTTAAAGCAGATACAGCCATGGACCTTAGCGAGCagATCACAGGACTTGAGAGTGACTTGAAAGAAGTGATGCAGCTCCTGGAGATGTGTGAAAGGAAGCGTGTGCAGGATATCCTCTCACAGGAGCAGAAAAGGATCGAGAAAGAACTGGCTCAGAAACAGCAACAGAGGGAACAGCAAACAAAAAGAGACTATGGAGACAAAGCAGACACAACAGTCAAGGGATACACAgtcaaaataaacaattatgGTTGGGACCAATCAGAAAAATTTGTAAAAGTCTACATCACATTAAAAGGAGTGCATAAAATCCCTGCTGACAATGTTCAAGTCAGCTTTGCGGACAGGTCTTTCAGTGTGCTTGTTAAAGATTTGGAGGGAAAAAACTATCAAATGACAGTCAACAACCTCTTGTGCCCCATTGTAGTTGAGGAGAGCAGTAGAAAGGTGAAAACAGACATGGTACTCGTCATGTGCAAAAAGAAGACAACAAAGAAATGGGAGTGTTTTACGCAGGTGGAGAAACAGTCTAAGGAGAAAGACAAACCCAGCTATGATGAGAATGCAGATCCTGGAGAGGGGCTGATGAATATGCTGAAGAAGATCTACTCAGAGGGTGATGACGAAATGAAGCGCACTATCAACAAGGCATGGGCAGAGTCACAGGAGAAGAAAGCCAGAGGAGATGAATTTGACTTCTGAGTCTGTCTCCTGGCTACGACTGAACTACAGTTTCTCACCTACATGCCATTCCTGTATAATTGccttttatttaacactttcttTTTTGACAGTCACTATGGCTGAAAATTCTTATTAGGACACAAGTCTATAAATTTGTTTGACTTTTCTGCAGTTGTTATTTCCCCAAGAGTGTcagaaaaactgtttaaaaacacCTGTTCCTAAAACCTAAAATGCTACACACTTGATTTGGTTTTCAAGACTGCATACTGataatggaaaataaattgTCGATAAAGAAAA

Function

GO: NA

KEGG:

id description
K04507 CACYBP, SIP; calcyclin binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84331 lncRNA upstream 26239 25923952 ~ 25928740 (+) True G71163
TU84208 lncRNA upstream 53020 25898135 ~ 25901959 (+) False LOC113539772
TU84503 lncRNA downstream 75024 26039182 ~ 26039383 (+) True G71322
TU84510 lncRNA downstream 164461 26128619 ~ 26128826 (+) True G71329
TU84555 lncRNA downstream 241400 26205558 ~ 26205786 (+) True G71373
TU84556 lncRNA downstream 244162 26208320 ~ 26208544 (+) True G71374
TU84559 lncRNA downstream 253968 26218126 ~ 26223996 (+) False LOC117597118
XM_026936184.2 mRNA upstream 1080 25951154 ~ 25953899 (+) True mrps14
XM_034304136.1 mRNA upstream 52973 25897017 ~ 25902006 (+) False LOC113539772
XM_026935816.2 mRNA upstream 52973 25898027 ~ 25902006 (+) True LOC113539772
XM_034304137.1 mRNA upstream 52973 25898445 ~ 25902006 (+) False LOC113539772
XM_026936643.2 mRNA upstream 73870 25822096 ~ 25881109 (+) False tnr
XM_026936904.2 mRNA downstream 9723 25973881 ~ 25979456 (+) True plk3
XM_026936905.2 mRNA downstream 9723 25973881 ~ 25979456 (+) False plk3
XM_034303955.1 mRNA downstream 78765 26042923 ~ 26124146 (+) True rasal2
XM_034303953.1 mRNA downstream 92765 26056923 ~ 26122574 (+) False rasal2
XM_034303954.1 mRNA downstream 92765 26056923 ~ 26117501 (+) False rasal2
TU84209 other upstream 53136 25898135 ~ 25901843 (+) False LOC113539772
XR_003404013.2 other upstream 73870 25707827 ~ 25881109 (+) False tnr
XR_003403979.2 other upstream 1083716 24859026 ~ 24871263 (+) False kif2c
TU83028 other upstream 1845090 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 2634636 23318504 ~ 23320343 (+) True G69509
TU84572 other downstream 264606 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 324132 26288290 ~ 26292784 (+) True zgc:66427
XR_003404062.2 other downstream 324132 26288290 ~ 26292784 (+) False zgc:66427
XR_004578101.1 other downstream 324134 26288292 ~ 26292784 (+) False zgc:66427
XR_003404060.2 other downstream 324136 26288294 ~ 26292784 (+) False zgc:66427

Expression Profile