RNA id: XM_026935823.2


Basic Information

Item Value
RNA id XM_026935823.2
length 1695
RNA type mRNA
GC content 0.46
exon number 7
gene id sdr16c5b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21298137 ~ 21303615 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCACATCCTGTACCGTTACCGAGCTCGCGCCAGTATTACCGACCTTTGTATTGGAGATAAATACGAAGTGTAATTTAAGTTTTAGCGACCGAAGGTCGACCATTTAGTGTTTGCTTAAATAAAAAAGCGAATGAACGCGGCGGCAGACTCGTCACTTGTGTTCGTGTGTGAGGTAGCTGAGTAAACTGACCTGCCTGTCCTGAGACCTCGTTCTTCTGCCGCCATGAACTTCTTCTTAGAGACTCTGAAGGTGCTCGGATTGTCGGTGGTCTACTACCTGGAGGCGTTTTTCCGGCTGTTTGTGCCGGCGCGGAGGAAGAGTGTTGAGGGAGAGCTGGTGCTGCTGACCGGGGCTGGAAGTGGACTCGGCCGGATCATGGCGCTGGAGTTCGCGCGGCTCGGCGCGCGCCTCGTGCTGTGGGACATCGACGAGGCGGGAAACCTGGAGACCGCGCGCCTTGTCAAAGAAACACACGGCTCGCGAGCGCACACCTACACCTGCGACTGTAGTAGCCGAGAGGTGGTGTACAAAGTGGCGGACCAGGTCAAACGGGAGGTGGGTGACATTACAATTTTGGTGAACAATGCCGGCATCGTCACAGGGAAAAAGTTCCTGCAATCTCCAGACCCGCTTATAGAGAAGACTATGGAGGTCAACAGCATGGCCCATTTCTGGACGTGCAAGGCTTTCCTCCCAGCGATGATTGCTGCAAACCATGGCCATGTGGTCAGCATAGCTAGCTCAGCTGGACTTATCGGTGTCAGCGGACTGGCAGATTACTGTGCTAGCAAGTTTGCGGCAGTGGGCTTTGCAGAGTCCATGGCTCTGGAGATGTTGGCTATGGGCTGTAATGGAGTGAAGACCACCATAGTGTGTCCCTTCTTCATCAACACTGGAATGTTTGATGGGGCTAACACAAAGTGGCCAAGACTCATGCCTATTTTGGAGCCAGATTATGTGTGTAGAAAGATTGTGGATGCTGTTCGGAGAGATCAGGTCTATCTATATCTGCCTCGTAGCATCTATCTTTCCATCGCTCTAAAGAATATGTTGCCTGTTAAAATAGGAGTGCTGCTTGGTGAATACCTGGGAGCATTTGACTTTATGGCTAAGTTCAAAGGACATGGCAAGAAGAGTAACTGAAGTCTGAGGAAAAATTAACCCCATCCATAGGTCTTCAGGATCATCGGCCGTGTTTTCAGTGACATTAGATCGAAGTCATTAATGGGACCAAAGCTGCATAGAGAAGAATAAAGCAATgaagaattattatttaaaaatatgcaagCATGGCAATGCAGTCTACTAGTGGCACTAAGGTATAACCACTCAGAGGCACTTAATCTGGAAAGTACATAAAATGTGCCAGTataataacaatgtaataaCAGGAGTGTATGTCTACATGTGTATAACAATactgtttgtattttatgaaaatactaAATTGCAAACTGAAGCAGCTAGCACATATTGATTGTAAATGTATCATGTCATGTATCATGAAATACCTCTAATGAGGGATGCGCAGTGTGTATAAATCAGCCTTGACTGACTAGTTTCTGTGGctcttttaatcatttttaatattttttatttcttaattaacagtAATGTGTTCTGAGGAAGATGGTACTAAACCGAAACAAGTTCAGCAACTAAACATCATTCAATAAAGCTTATAAACCACTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K15734 SDR16C5; all-trans-retinol dehydrogenase (NAD+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80993 lncRNA upstream 63879 21234025 ~ 21234258 (+) True G68313
TU80981 lncRNA upstream 88813 21205745 ~ 21209324 (+) True G68304
TU80969 lncRNA upstream 109003 21188531 ~ 21189134 (+) True G68299
TU80850 lncRNA upstream 402182 20864878 ~ 20895955 (+) True G68192
TU80696 lncRNA upstream 605026 20692263 ~ 20693111 (+) True G68070
TU81190 lncRNA downstream 12640 21316255 ~ 21316515 (+) True G68435
TU81189 lncRNA downstream 17530 21321145 ~ 21321406 (+) False plag1
TU81294 lncRNA downstream 183359 21486974 ~ 21487488 (+) True G68523
TU81417 lncRNA downstream 429331 21732946 ~ 21749319 (+) True G68621
TU81415 lncRNA downstream 450493 21754108 ~ 21762282 (+) False LOC113540377
XM_026937031.2 mRNA upstream 10778 21283954 ~ 21287359 (+) False penkb
XM_026937030.2 mRNA upstream 10778 21283959 ~ 21287359 (+) True penkb
XM_026935832.2 mRNA upstream 103447 21189573 ~ 21194690 (+) True ggh
XM_034303658.1 mRNA upstream 103447 21191377 ~ 21194690 (+) False ggh
XM_026937310.2 mRNA upstream 285881 20935685 ~ 21012256 (+) False camk2d1
XM_026936593.2 mRNA downstream 10603 21314218 ~ 21323967 (+) True plag1
XM_026936594.2 mRNA downstream 10603 21314218 ~ 21323967 (+) False plag1
XM_026936371.2 mRNA downstream 22408 21326023 ~ 21328840 (+) True rps20
XM_026936369.2 mRNA downstream 26676 21330291 ~ 21337139 (+) True zgc:56231
XM_026936873.2 mRNA downstream 116970 21420585 ~ 21424078 (+) True lypla1
TU80896 other upstream 264384 21020258 ~ 21033753 (+) True G68232
trnaa-cgc other upstream 945652 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 1143366 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 1197039 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 1469247 19828819 ~ 19828890 (+) True trnah-gug_5
XR_003404073.2 other downstream 23731 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 325461 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 325461 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 448801 21752416 ~ 21762301 (+) False LOC113540377
XR_004578017.1 other downstream 450403 21754018 ~ 21762301 (+) False LOC113540377

Expression Profile