RNA id: XR_004578074.1


Basic Information

Item Value
RNA id XR_004578074.1
length 3948
RNA type misc_RNA
GC content 0.47
exon number 3
gene id LOC113539780
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16310213 ~ 16319166 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGGGAGTACAGTGACTGCATTTTGCTGCTTCACATTGTTGtctattttcattatatttgcactttttttgtttaCCCATGACATTACGTAAAAACTTGCTTAGTGGAGATGCACTTACTCTCTGAAGCACAGAGTGTTGGAGATTAAAAACAGTTCTGGCATTAGCCGAGCAGGTGCATTGTGAGGAAATCATGGTCGCACTGAGTAAAGGCTAGACAGGTAGATGACGTCAGTGCGTACAGAAGGATATAATTTATAGGAAAGTCTCCATGGCTACGTCCCAAACCACCTACTATTGTATTAATTAGTATGTCAGAATATCTTACCGGTGATACCCTCTTTAGTAGGGTATAGTATGTGGGTTTGGACGTAGCCCATGTGTATCTATTGTTCCTCTATAGGCCAGGAGAGCGGAGGGAGACCTCTGATGACGTGCTCAAGGAGAACAGcatcatacaaaaaaaagagcaaaagaaaaaaataatacagcGCCTTACCTCTTgtagacaatttttttttaacgtatCCGATTTTAGAAGTGTAATAGCCAGTCtgcgttgttttttttctcttttaatatctaagattaatttatttaattaattaatccagCCTTCCCCCTCGCCTCCCTTTAGCAGACGTAAACAGCTTCACCTCCACATCCGCATCCTCGTTATAACGCGCTGTTAAAATAAAGGGATGCAGACTACTGACTGCATAAAATGGTCCGATTCGAGAAATTGCGTTTACGGATCGTGTGAAGgacaatatatttaaaattagagTGGCGGTTAGTGCAGTTTGTCTCGCAGCGCCGCAGGTGTTGAAGCGGATGCTGAGGCGGCGGATGGGGTGAGTCTGGCCGGAGCGGAGCGCTCCAAGAGCGGGCTGCTCCTGAGTGAGGGTCCGCTACAGCCGGAACGCTGAGCGGGAATAATGCAGGACGCGGCGGACGGAGAGGAGCCCATTCTGGCCGGGACTGCCAGGGAAGAGCAACGTCCAGTGAAACAGTCTCTGGCTAGCTCTCTGTGTCGGGAGTCACATTGGAAGTGTCTTCTCCTCACGCTGCTTATGTATGGATGTTTTGGCACACTGACCTGGTGCGGATTATGCAAGGTTCCCGTCCTCACAGTCCCCGTAGAGCTTGCAGCTACAGTATTGGAAAATGAAGACCAGTCTACAACTTCAGCTGCTGCTAATGCCTACAGCCCTGATGAGTTGGCTCTGGACAGCCCTTGCTCAAGTGGCTATGTCTACATTCCACTGGCTTTTCTGGCCATGCTATATGTGGTCTACTTGGTGGAGTGCTGGCACTGCTACTCCAAGACTGCCATGCTGGCTCAAGCAGAGGTTGCAGAGGTGTACGAGCGTGTGCAGAGACTTCAGCAGGCTACGCCATGTATCTGGTGGAAGGCCATCAGCTACCATTATGTTCGAAGGACCAGACAGGTAACACGCTACCGCAATGGAGACGCATATACCACCACACAGGTGTACCATGAACGGGTCAACACGCATGCAGCGAGTTCAGAGTTTGACTATGCCAGGCTGGGTGTGAAAGATGTCTCAAAGGAGCTAAGGGGCCTCATGGAGCATCCAGCAGTACGTCTGCGCTTTACAAAGTGCTTTAGTTTCTCCAGTGCCCGAGCAGAGGCTGCCTACCTCACACAACGTGCACGGTTCTTTGGGGAAAATGAAGGCCTAGATGACTACATGGAGGCACGGGAGGGAATGCACCTGAAAAATGTAGACTTCCGTGAACATATGCTGGCCTTCCCTGACCCCGCTCGGCAGCCCTGGTATGCGCGCCGGAGGGTGTTCTGGCTTGCTTCAGCTTTGCTGCTGTCATGGCCACTTCGTGTTGTGGCAGAATATCGCACTGCGTATGTGCATTACCATGTAGAAAAGCTGTTCGGCGATGAAGATGACAGCAGCAGAGGGGACGGAAGCGAGAATGGGGGAATCACTGAGAATGTAAATGGACCTGGAGGAGGGGCCATCGGATCGAGCTACCGTGCCATTTCCCGGGTTAACACCGTTGACATGACGGAACTTGAGTGGCACATTCGCTGCAATCAGCAGATGGTTCCCAGCTATTCTGAGGCACTACTGATGGATCCTGGCTCAGATGGTAACCAAGGCACTAACCCCCCTCCTGCTGGGGCAAACTCCAACACGGGAGGTCCTACGCTGCCTGTGGCCTTTGCCTCAGCCTACCTGCTCCAGAGCTGCCCTCGCTGTCGCCGGTCCACTAGCAGCATGTCACTCCCTTCCAGGCTGAGAGGCCCAACGGCTGCCTTGCTGACTGGCACTGTGGCTGGCATGAGAGCTAGCGGAGCGGGAGGTGCTGCTGGAGGTCCAGGCAGGCTTGTTCTAAGCAGAAGTGGTTTTTCACTGGGTCGTCTCCAGGCCACACGTCCCACATCTCTGTTCCATTCTCGCAGTGTGGGTGGAGGTCTAGGAGGAAGAGGGGAGGAGGGGAGTGGTGCAGGAGCAGGAGGTGGAGGGTTTCTTGGTTTGGGCTTAAGACAGGATGAGGAGAGCAGAGGGGTGCTAGAGGGAGAaggggaggaggaagaagaacagGGAAACGAGGAGGCtggggaggaggagagagaaagacaagaagAGGAAGCAGAGCAGCCTGAAGATAGCAAcagagaggaagggagagagggCGAAAGGGATCGACCTCCTGCATATCAGGATGCTTTTTTCTTCCCTGTGTTAATAGTGCATGGAGAGGAGAGTTGTCACTCAGGAGAGGACATCTCTTAAACAAGAGGAACGACTTCCccaaaaaggagaaaatgggaGGATGGCTATATAAAGATAGAGGTACAACAGAATCACCAAAACTGCAGCCTTGGAACCCAAATGGATCACAGTCTTCTGTAAGACACCCCACCTGTGCATGTAACTTAACGTTACCTCAGCCTATGCGCTAACAGCAGACTTGCAATTACAGTGTATCCCATTTTTCAGCAATGGAAACACCACGACCCTGTTTTCTGACCTCCATCTATCCAGCTTAGACTGGTCTTAACATCCTCAACTACTCTTGCTTTGCATGCTGTTTGCTGAGGCTTGGTCGAAGCAAGATGACTTTGGGAGATAATGATGTGTTGAACATGCTTAGGAGCTTTGGCTCATTTAGGAAGGAGTGTTTCACCTCTGTTGTATAGCTTGGACCAAGACTtctcatttaaaatgagaaaGCTATATTCTGGACATGAAATGGCTCAGTACGTAGTTGCTATGAGAAGCATAAAAATGTGGAGAATGTTCTCTATGCTGGAAGCTTTATCACATCACTTTGTTATAGTGAAGCACATTATGGTTTGGGTATATTTGCTATATTAGtaagtttatttgttttgtagtgTATCACCAGTTTTGCCTCATGAAGGGCTTTGCTCAGCTACTATGCCTCACACAGACACCTTGTTTTATGGGACTTTATGGTGCAACCATACAACACATTGCCTTCCATTATAGCCTCTGTACTTGTCTCTCATATTGTCACATGAGCATGAACCAGCTAATCATTAATGAAAATGGTTAGTGTGCCAAGAAATACTCACTGATTGCTAATAATTGTACATATCAGTGGCCACAGTCTATACCTATTTTGTATATAGGACATACTTTTACcagacaatttttttatttttgcacagaTGCTTATAAAGCCATATTTCCAGTCACTCAGTCCTACATGCTATATTTGTTTTgagtgtttttatgtttgtatgtatatatgatgcCTTTCTATATTCCGTGCTTCTGGATCTGGGACTAATACTACAGTTGCATTATGGCACTTCTCAAGCTCTATTGTTTGTCATAGGATAAGCAGAAATTATTTGGCAGTTTCACATGTTTCTCAAGTTTTCTcactcaaaaaacaaacaaacaaacaaacaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77337 lncRNA upstream 79098 16223418 ~ 16231115 (+) True G65335
TU77172 lncRNA upstream 246752 16062088 ~ 16063461 (+) True G65199
TU77152 lncRNA upstream 255068 16019857 ~ 16055145 (+) True G65184
TU77137 lncRNA upstream 308752 16001155 ~ 16001461 (+) True G65170
TU77079 lncRNA upstream 439442 15869198 ~ 15870771 (+) True G65115
TU77409 lncRNA downstream 72963 16392129 ~ 16392363 (+) True G65382
TU77422 lncRNA downstream 111295 16430461 ~ 16430686 (+) True G65395
TU77544 lncRNA downstream 112779 16431945 ~ 16442900 (+) True G65495
TU77609 lncRNA downstream 195471 16514637 ~ 16514841 (+) True G65542
TU77650 lncRNA downstream 250521 16569687 ~ 16577737 (+) True G65580
XM_034303998.1 mRNA upstream 56 16299941 ~ 16310157 (+) True mus81
XM_026936115.2 mRNA upstream 11492 16291819 ~ 16298721 (+) True ovol1a
XM_034303836.1 mRNA upstream 25929 16278990 ~ 16284284 (+) True LOC113539958
XM_026936367.2 mRNA upstream 32719 16264254 ~ 16277494 (+) True si:dkey-9k7.3
XM_026936368.2 mRNA upstream 46016 16256665 ~ 16264197 (+) True tkfc
XM_026936976.2 mRNA downstream 24178 16343344 ~ 16349401 (+) True fis1
XM_026936718.2 mRNA downstream 33595 16352761 ~ 16355963 (+) True cldn15a
XM_026936717.2 mRNA downstream 37075 16356241 ~ 16366191 (+) True dnajc3b
XM_026937153.2 mRNA downstream 48801 16367967 ~ 16370957 (+) True LOC113540582
XM_026937150.2 mRNA downstream 52831 16371997 ~ 16411701 (+) False chd3
XR_003403994.2 other upstream 270229 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 1651277 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2040873 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 2590759 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 2747947 13558623 ~ 13562266 (+) True cited1
XR_003404046.2 other downstream 48790 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 441353 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 441583 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 441815 16760981 ~ 16761107 (+) True LOC113540745
XR_003404113.1 other downstream 442100 16761266 ~ 16761338 (+) True LOC113540743

Expression Profile