RNA id: XM_026935836.2


Basic Information

Item Value
RNA id XM_026935836.2
length 1577
RNA type mRNA
GC content 0.47
exon number 9
gene id ebna1bp2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27144064 ~ 27151124 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAAACAATGTGCTACCCGGACTTTTTTGCGCGTGCACAAAGTCGTTCAGCAAGCCACGACTAGGAAACGCACGTGAGAGCTTAAAAAAcctttataataatttattttactgtttgttCAAGATGTCGGATGTAGAAGAGGATTCTCAGATGGGAGCAGAATCTGAAGAGGAGGATTATGATCTGTCAGATGGAGAGCTTCAAGAGGCTTTCTCCAAAGGACTCCTCAAACCCGGTATGAACATTCCTTTAGAAGAACCTAAACGAGCCGTGAACAACATGGAGGGTTTGAAGAAATGCCTGGCGGAGTTTAAGAAGAATCTGGCCTGGGTGGAGAGGCTGGACCTCACCACTCCGCCTGCTGACGACATCGTGGCTAAAGCGGAGGGGAGGGCGGAGCCAAGCCAGGACGGAGACGAGATCAACGCAGACGACGACTTTCAGAGGGAGATGTACTTTTATCGACAGGCCCAGGCGACTGTTCTCGAGGCGCTGCCCAAGTTACAGAAGTCACAGATTCCTACCAAACGGCCGGACGATTACTTTGCGGAGATGGCCAAATCAGATCAGCACAtgcagaagatcaggAAGAAGCTGATCCAGAAGCAGATGGCGATGGAGAAATCTGAGAAAGCCAAGAAGCTGAGAGAACAGAGGAAGTACGGCAAGAAGGTCCAGGTCGAGGTTCTGCAGAAGaggcagaaggagaagaagtCCATGATGATGGCAGTGAAGAAATATCAGAAAGGTATGACTGACAAGCTGGACTTCCTGGAAGGAGATGGTGAGGGgaagaaagcagcagcagcagcaccgtCCAAACCACACATTAACAAGAAAGGCCCTAACGCTAAGAGGAAGTACAAGGACTCGAAGTTTGGGTTCGGCGGCAAAAAGAAAGGCTCCAAGTGGAACACGAAGGAGAGCCACAACGACGTGTCGGGATTCCGGGCCAAAGTCGCTCACGGCAAAGTAGGCAAGAAGTTCAGCAAAGGTGGAAAGAAGAATAAGCGGCCAGGAAAAGAAGCACGGCGTAAGATGAAGGCGCGGAAATGAGACGCGACTGTGATTAACATCTTTAACATGGAGATCTGACTGGACTTACATGAACTTCAGTGGACCTCCATGTTGGCACGAgttgctccacacacacacacacacacacacacacacatagtggaagcttggtgtagtgtgtgtgtgtgctgtttttgagGAGGACTTTAAGGAGTGACTCGTAGTGATTCTTACTGATGGATCACATCAGTAACATCACATCTTATGTCACATCTTATGTTGTTGCTTTCCTTTATGATTTGTGAGTTATGTGTTGACTGGATAAATTTGCCATTTTGTTggttggatattttttttatccaggaTTTTTGTAATGCACCACTGTTCAACTGTTCCAAGTGCCAAAGTTTGTGTGGATTTACACTCATTTTTCCCCGAACATGGCGGCTCGGTGGCGAATCAGAACCAAGGACTCACCGATTCTATGTCGTAGCTTTACCTGTGGCAGTAGGAAGTTTTTCTCTGGTGACCAGTGATAGGcacaagaaataaacaaaat

Function

GO: NA

KEGG:

id description
K14823 EBP2, EBNA1BP2; rRNA-processing protein EBP2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85154 lncRNA upstream 69988 27073841 ~ 27074076 (+) True G71827
TU85145 lncRNA upstream 101152 27042703 ~ 27042912 (+) True G71819
TU84807 lncRNA upstream 262595 26872676 ~ 26881469 (+) True gng7
TU84796 lncRNA upstream 287459 26808057 ~ 26856605 (+) True G71557
TU84789 lncRNA upstream 357504 26784572 ~ 26786560 (+) True G71550
TU85197 lncRNA downstream 44877 27196001 ~ 27196373 (+) True G71864
TU85201 lncRNA downstream 66228 27217352 ~ 27217839 (+) True G71868
TU85202 lncRNA downstream 67103 27218227 ~ 27218455 (+) True G71869
TU85207 lncRNA downstream 78738 27229862 ~ 27230100 (+) True G71874
TU85277 lncRNA downstream 132936 27284060 ~ 27284463 (+) True G71941
XM_026937317.2 mRNA upstream 105705 27030740 ~ 27038359 (+) True LOC113540681
XM_034303201.1 mRNA upstream 105705 27030740 ~ 27038359 (+) False LOC113540681
XM_026937328.2 mRNA upstream 130419 26983742 ~ 27013645 (+) False LOC113540685
XM_034304033.1 mRNA downstream 22937 27174061 ~ 27237097 (+) True LOC113540389
XM_034304034.1 mRNA downstream 22937 27174061 ~ 27237097 (+) False LOC113540389
XM_026936094.2 mRNA downstream 114446 27265570 ~ 27270794 (+) True LOC113539951
XM_034303330.1 mRNA downstream 123048 27274172 ~ 27286654 (+) True LOC113539841
XM_026935910.2 mRNA downstream 123048 27274172 ~ 27283729 (+) False LOC113539841
XR_003404108.2 other upstream 30810 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 479982 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 768285 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 779831 26353189 ~ 26364233 (+) False LOC117597079
XR_004578101.1 other upstream 851280 26288292 ~ 26292784 (+) False zgc:66427
trnat-ugu_5 other downstream 338129 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 405393 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 406641 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 469481 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 470187 27621311 ~ 27621383 (+) True trnat-ugu_8

Expression Profile