RNA id: XM_026935838.2


Basic Information

Item Value
RNA id XM_026935838.2
length 2814
RNA type mRNA
GC content 0.40
exon number 5
gene id rgs18
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29967671 ~ 29976291 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTAGTTCCCATTGAACAGGAAGTGTTAACGACAGGTATGGGAAATGACCTGCCAGATACCAATCCGTGCTTTGAGGATTTGCGGTTAAATAAGATTGATGTCCTGCTGTCTAGCTtcatgagtgagagagacagagagggagagtgagacggGGAAAAGCATGGAGAcctttgtctttctgtttcctCAATTCGACTTCTCTGCCCCCAAGGAGGAAGTGTGTTTCAAAATGCTCGGCGAGACCGTGTGGCGTGCTACCAGAATGAAAGACAGCCACTCAAGAAATAAGGACAAGGACAAAGATAAGGACAAGGACAAAAAGTATAGACTCAGTCTTCTGATGACCAGGTCTGGATCGCATGAAAATGTGAGCCCAGAGAAAAAGGCGCCAAGTAAAACCATTCAcatTCCACCTGAGGTCGCTTTGAGATGGAGCGATTCCTTTGAAGATCTGCTGGCACATCCAGATGGAGTGGAGACCTTCACGCAGTTCCTGCGCTCCGAGTTCAGCGAGGAGAACATCGAGTTCTGGTTAGCGTGTGAGGATTACAAGAGCACAGCGTCCCCTGCCAATCTGCAATCCAAAGCCAAGCAAATGTATGCAGTATTTATTGACGCCGCGGCGCCCAAAGAGATTAACATCGACCATTCAACCAAGCTGGACATACAGAAGAACATCGCACAACCGACGCAGTCATGTTTCGATTCAGCGCAGAGCAAAATCTACGCCTTGATGAAGAAGGACTGCTACCCACGCTTCCTCACCTCAGACATCTACCTGAGCCTGACCAAGAGGAAAGCGCCTCCTGCCATGACCAGGAGAAGGTCTCGATCTTTTGTCTTCAGTGACCGCGAAGATAACGCAGCAGCCTGGTTGTAGCTCCTCAATGACAGTTAGTATAATAGTTTCTACAGTCGTAGCTGTGCATCTTTCACACTCAGTGCCTTGCTAGATGTGCGTTGGACAGTATTTTTTTCCCTGGGTCAGCAAAAGAGTTGAGCTTAGATTCCAATTTCAACGATCGCAGATTGGATCAAATGATATCACCGTCAACATGGCTTCATTTCAGTGTATTCGCTTAGCATAAAATATTGGTTTTATATGCCAGTAAAGTTAGATAGTGGGCAGGCAGCTACGTACAGGACTGTGTTAACGTTACCGAGCTAAATATCGAACTTGGACAACGTCAACATTATGTTTCTAGCAGTAGCTTATATTGTGTAGCTATCCAAGTTCACTAGCGAGCtaaattaattgttttaagGTCAGATGGTGTTTTTCCGTAACGGCaattctgacagtagtgccggctgcTAGGCAAATcccaggcttatattaatgcgcttgttctaatgcgttatcgtttccatagtaacagcgcATTCGCAGGGACTTCTATCAACgatgatttgcataatctaaggctaaaataaatggattaaaaatgttaacaaatgttaaAGTTATCGATTGATATCGgaaggttttctgtaaggagatgtttatttaacatttatggaaggagtctccagtgccagagctttgtaacagtcatgggaaagtctttaggatggaggagtttgcagtttcttagtaacatgacaagctgcttttttttgtgtgtgtgtgtgcatgtgtgtgtgtgcaggtgtgtgttattaattttaagagagaggtgagagaacgtctgtttatagctgctacaacgtgCGTGATAACTTGTTTCGcaacattaatgtaactatataaTTCGGGACGTGAtggtgtaggaaaataatcagcttctaggtaacagtaactcaacAGTAACACATCAAGCTACGTGACaacaccctgtcgttgattattctcctataactgcacacccagagtgtttcattctttacttACAGCAGAATTTAAACCAGGAGCCAAAGTCACACGCAAGCTAGCTAATCACAGATAAAGTATTGTAGCCACTGATTACGTTtaacttaagctccgccccttgtTGTCCCAAGAACTCCTGTCACTATGGAAAATCAGGGTGTTCACGATGATTCATACATATCAGTAtcgaagttgttttttttttttttttttaaataaaatatctgtttacACAAGTGCAAGTATTAAACTCTGACCCAGAAATTTAGCTTCTTGCTATGAGAAGCTATGAGAAGATTTTATCAAAGCAATGCAGAAATATTAAGGACTAAACTATCTCACATTTCCTTCCTGTCTATACTATTGTATTATTCAACACCTAATATACATATTagcattgtttttgttgtttttattttacattaggACTTATTTACATTCAAGTACTAATCCAAGCCATGAATTATTTATTGACTAAAACTTTTCCCTTTGCCGAGAGTTTCATGTTAATCTATTTCTATCTACATGATTACGATCTTAGCTTTAATTTGTAAATTGTATATACAACCTGTGTGATAAATCATTGTATAATAAAAGCGTTTCTCAATAAACGATTCATGATCTTGATGGAGCTCCGCTTCATGTCGGGGCGCACATTGCGCCacaccattgttgattatttcctataacagcatgcccctatgtgttttatttcttttatatttattggcGTAAATTCTACGGTTTCGGGTGGGACgattgttattaaaataaacatttcatctCTGACTGAAATTATCCATGAACAAAGTCTGTTTCAAAATGAACTGATTTCAGGAATTgtaaagaaatgagaaagagaaagaatgagaaataaCAATATTGTCCTTTCCTTACAAGCACTGTAATTAATGGATTGATAAAGACTTTTAACATGAAAAGC

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0071599 otic vesicle development biological_process
GO:0002574 thrombocyte differentiation biological_process
GO:0048840 otolith development biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0048884 neuromast development biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87101 lncRNA upstream 37503 29929938 ~ 29930168 (+) True G73512
TU86755 lncRNA upstream 173466 29792516 ~ 29794205 (+) True G73185
TU86735 lncRNA upstream 201565 29765120 ~ 29766106 (+) True G73169
TU86721 lncRNA upstream 234308 29732651 ~ 29733363 (+) True G73155
TU86688 lncRNA upstream 243921 29722066 ~ 29723750 (+) True G73123
TU87134 lncRNA downstream 56019 30032310 ~ 30032788 (+) True G73533
TU87172 lncRNA downstream 108147 30084438 ~ 30084819 (+) True G73564
TU87146 lncRNA downstream 134321 30110612 ~ 30111156 (+) True G73545
TU87175 lncRNA downstream 136098 30112389 ~ 30112630 (+) True G73567
TU87176 lncRNA downstream 141715 30118006 ~ 30118492 (+) True G73568
XM_026935987.2 mRNA upstream 206699 29752071 ~ 29760972 (+) True LOC113539887
XM_034303651.1 mRNA upstream 246903 29704488 ~ 29720768 (+) True rc3h1b
XM_026935837.2 mRNA upstream 286496 29673705 ~ 29681175 (+) True zgc:153115
XM_034304047.1 mRNA upstream 343874 29620111 ~ 29623797 (+) True asip2b
XM_034303441.1 mRNA upstream 364841 29596466 ~ 29602830 (+) False LOC113540482
XM_026936318.2 mRNA downstream 9894 29986185 ~ 29989435 (+) True rgs1
XM_026936317.2 mRNA downstream 22213 29998504 ~ 30001345 (+) True rgs13
XM_034303701.1 mRNA downstream 38364 30014655 ~ 30022571 (+) True blvra
XM_026937116.2 mRNA downstream 69604 30045895 ~ 30050490 (+) True ebi3
XM_026937105.2 mRNA downstream 121414 30097705 ~ 30109835 (+) True keap1a
TU86682 other upstream 344634 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 1055567 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2346288 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2346994 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2409769 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 769840 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 769840 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1085439 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1374970 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 1793531 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile