RNA id: XR_003403975.2


Basic Information

Item Value
RNA id XR_003403975.2
length 1681
RNA type misc_RNA
GC content 0.49
exon number 8
gene id zgc:110366
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29724588 ~ 29730857 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTTTACGACACCTCTGGCTGCTTATTGGACACGGCACATATTTCTCCGCATGAAGAGTTTTGGTATGAAAGAAGCCGCTTTTTGTTTCTCCAATGCAGCATTTCCCAGACGTTGAGCTTTCCAATAGACTGAAAATCCCAATCCTAGGTTTAGGAACATCGCACAATGGTGGCTACTCCCACGATGCAGTCGTCTACGCGCTCCAGCAGTGCAGCATCAGGCACATAGACACGGCTAAAAGATACGGCTGTGAAGAAGCCTTGTGTAAGTCAATCGTGGAGAGCCGAGTCCCACGTGAAGATCTGTGGATCACCACCAAGCTGTGGCCAGGGGATTATGGGTATCAGAGCGCCAAGGAGGCCTGTCGGGCCTCGTGTGCCAGACTCGGGGTCGAGTATTTAGATCTGTACCTAATGCACTGGCCTGACTGCGGCGTTCCGGGCCGCTCCAACAGGGACGTCCGAGCCGACACGTGGAGAGCTCTGGAGGAGATGTACGACGAAGGATTGTGCCGTTCCATCGGCGTGAGCAACTTCCTGATCCCACATCTCGAGGAACTGAAAGAGGACGGTGGCGTGATGCCTCACGTTAACCAGGTGGAGTTTCATCCGTTTCAGCAGCCGTGGCAGCTGGTGGAGTTTTGCCGCAGCGAGGGCGTAGCGTTTGAGGGTTACTGCCCTCTAGCTAAGGGTCAAGCGCTCCATCATCCACTCATCGTGGAACTGGCGCAGAAGTACGGACGCAGTGCTTCACAGATCTGCATCCGCTGGAGCATTCAGAATCGGATCATCACCATCCCAAAGTCTACCAAACCTGATAGGATTCTTGAAAACTGCCAAACTGCCTCTGCATGCACAGGTGTTTGGGTTCCAGCTGGAAGACACTGACATGGCTGCCATGCACGCGTTGCATGATGGGAGGCGCGTGAGCTGGGACCCAACCCACGTGGAGTGAGCACGCTGGTGTCTTTGGGTTCACGCTGGCTGAAGAGGACATGGAGAGTATCGGGCGACTACATGCAGACAAAAAGCTTATTCATCTCAGCTACCCGCTCTGGAACGGATAACGAGAACGGGGCAGCGGGTTCGGCTTTGTGAATTTTTAGACATACCCTAGATCTCCTGCGCACATCACACAGGATGGCTCCGTGGAGCACATTATGTCCCAAATTCTGATCATTCTGATTTCCCTGATTAACAAGACAAATGAACCAGGTCATGTAGCTGGCTTGGAAATTGGAAAGATGAGAAGATTTACAGAAGATTTATTTGAGAAGATTTACAGTTACATCTAGAGTGTGAACCAGTTTGGTTCATCCTTTTGGGAAACCCCATGGAGGAATTTTCTAGAATCCTTCAACTTTTTTTACTTCAAAAAGTTTAGCTCACGAAGGAACGCTTGAAGAACCACCAGCGTTATTGCTTTTGGGCATGGCATCTTCTCCGTAAGCCATCAGACGGTCGATCTTACACTCAGGTGGCCATGTGTGAGGTgttgagtcttttttttcccagatgtcaaagaaattaaatgcatCTAAGCTACTTTCGGACAAAAGTCAATAATAGCTATAGCTATGCAAGTGCAAGCACAATGTCACTcatttaatgaaacatttcaaaatcctgtattttataatgaaataaatccgCACAGACTTAAGTGTCAATATTGTTTAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87043 lncRNA downstream 10178 29713999 ~ 29714410 (-) True G73459
TU87042 lncRNA downstream 11142 29712893 ~ 29713446 (-) True G73458
TU87041 lncRNA downstream 12394 29711086 ~ 29712194 (-) True G73457
TU87036 lncRNA downstream 50318 29671187 ~ 29674270 (-) True G73452
TU87022 lncRNA downstream 116783 29607601 ~ 29607805 (-) True G73439
TU87063 lncRNA upstream 32648 29763505 ~ 29763791 (-) True G73479
TU87032 lncRNA upstream 34267 29765124 ~ 29765632 (-) True G73448
TU87028 lncRNA upstream 34890 29765747 ~ 29766115 (-) True G73444
TU87065 lncRNA upstream 47698 29778555 ~ 29780132 (-) True G73481
TU87071 lncRNA upstream 61355 29792212 ~ 29793644 (-) True G73485
XM_026936229.2 mRNA downstream 18906 29693378 ~ 29705682 (-) True si:ch211-13f8.1
XM_034303650.1 mRNA downstream 18906 29694390 ~ 29705682 (-) False si:ch211-13f8.1
XM_026936973.2 mRNA downstream 32033 29681244 ~ 29692555 (-) True si:ch211-13f8.2
XM_026935978.2 mRNA downstream 57733 29629970 ~ 29666855 (-) False LOC113539879
XM_034303335.1 mRNA downstream 57733 29629970 ~ 29666855 (-) True LOC113539879
XM_026936015.2 mRNA upstream 1408 29732265 ~ 29748113 (-) True cdc14aa
XM_034304044.1 mRNA upstream 35351 29766208 ~ 29794142 (-) True xpr1b
XM_026937271.2 mRNA upstream 66213 29797070 ~ 29812557 (-) False ddr2b
XM_026937270.2 mRNA upstream 66213 29797070 ~ 29812557 (-) False ddr2b
XM_026937269.2 mRNA upstream 66213 29797070 ~ 29812557 (-) True ddr2b
XR_003404065.2 other downstream 148861 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 199527 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 199901 29524509 ~ 29524687 (-) True LOC113540697
XR_003404072.2 other downstream 200676 29523723 ~ 29523912 (-) True LOC113540698
XR_003404076.1 other downstream 201122 29523394 ~ 29523466 (-) True LOC113540702
TU87233 other upstream 288649 30019506 ~ 30022525 (-) True G73619
TU87613 other upstream 1010812 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 1042606 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 2136225 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 2139661 31870518 ~ 31871874 (-) True LOC117597010

Expression Profile