RNA id: XM_026935856.2


Basic Information

Item Value
RNA id XM_026935856.2
length 2815
RNA type mRNA
GC content 0.42
exon number 7
gene id ctdnep1b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18000158 ~ 18010962 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTAAACAAACCTCTTCACTTCTTGCTTTGGGTTCTTTCCcagcttatttttcttttgatattgctttgtgctttctgttgTCTTATTGCAAGACATCACATGTCATGTTCTCGGAAATTAGGCCTAACTGTTTGTAGAAAAGTCGTTAAACAGAAgtacactttctttctttttatatccAAAACCTTTGCGCTGAACTGCACATTAGTGACATTCCACGTCAGTGAAAAGTAAAACTGATGACACACATCCTGAATTTGAACGTCCTGTCAGGGAATATCAAACCCTGGCACTTTGTAACCTTCTGGGGATGTTAACCGTCTGTCTGCCATGTCTTTGTGCTCTGTTTTGTTGTCGACGCGTTTGTTTTAACGAGAAAACCAAAGGCGAGGTGAAGTTTGGGGTCTTTGCGGAAGTGACGGCGTAGTTCCGGGTTTGGTTTGAACTGTCTCTCAGCACTGACTCTTTATTAACTGAGCTGCACCCTTCAGCGGTGAGGAGGGAAAACACTGCATTCAGCGCCACGGCGGTTGGATTATTTGTGCTCTGCTTGTGGACTGGACCTCATGTCACCTCCACAAGTCATCAGCCGGTTCACATAGCCACACCGCTAGCTAGCTggatttgtttggtttggtttggctAATTGAGCTGGACACTATTTAAACCCCTAGCTGCTTCGTTCACTACAAACACATGCACTTTTAGTTCCTggggttttctttctttctttttttacaccGGTTTTCAGCAATGAGAGCCTTCGGAAAgaaaactgactgactgatgtTCACAGACTCTTCTGGAAACTCCAAGCTGTAAATGATAGTGCGGATCTCCTAAGGTTTCAGCTAGCGGACAGAGAAGTGATTTATACGGTGTTATGGTTGACATGCTAAAGACTCGTCAGTGTCTGCTGTGTGTCCGCACTTTCTTTAGCGTGACGTCCAAGTTATggagtttatttttgtatatccTCAGGAAACCGCTAAGAACGATAATCCAATATCAGACGGTGCGATATGACACTTTACCCTTGTCACCGTTGTCTAGAACCAGACTCAATTCAGTAAAGCGGAAGATTCTGGTTTTAGACCTCGATGAGACATTGATTCATTCACATCATGATGGGGTTCTGAGACCATCGGTACGGCCTGGCACTCCTCCGGACTTTATCCTTAAAgttGTTATAGACAAGCATCCAGTCAGATTCTTTGTGCACAAAAGGCCCCATGTGGATTTCTTCTTGGAGGTGGTCAGTCAGTGGTACGAGCTCGTAGTGTTCACTGCTAGCATGGAAATCTACGGCTCTGCAGTAGCAGACAAGCTGGACAACAACAAAGGCATCCTGAAGCGCAGATACTACAGACAGCATTGCACGCTGGATCTGGGTAGTTACATAAAAGACCTGTCTATCATACATAGTGATCTTTCTAGTATAGCAATTCTTGACAACTCGCCTGCGGCATATCGCAGTCATCCAGATAATGCAATACCTATAAAATCATGGTTCAGTGATCCCAGTGATACAGCACTTCTTAACCTTCTGCCAATGCTGGATGCACTAAGATTCACAGCTGATGTTCGGTCCGTCCTTAGCCGAAACCTGCACCAGCATCAACTTTGGTGATCGTCCCACTGAGAGACATTGAGTTTTTAACTTCTTTCCATGCAGACTCTGTCCCTCTTTCGTACAACACCAGCACAAGTGTGATCAGGTGAAGGTCCAAACTGAACTTGCTTGAAGGAAGTTAAAAAACATTGGGAACATGTTGACCCTTGGTGTCCTTTCCATCTTCAGACTGGAGTCCCTGTCTTGAATTTCTTCTGCAATACTGTGGGAGGACTGCACACAAACCCAGGAGCACAGGGACAGAGCCCTGAAGGGACAGTTTTATTTGCACAGTGCCATGGTTTTAATACGACAGACATTAGATTATTCTGCATTTCTCAGGTTATTGGCAATGGACAGTGTTCTTCCGTGTTCTTCCATTGACGTGAGTATGTggatgaggaaaaaacaaagagcagTAATTTGGAGTCCTTGTTTCTACtcacctttctttctcttgagtGAAGTCTTTGTAGCCACCAGCTTGGAAAAGTGAGTGTCAACGGGTGTTTTTTAAGGGCAACAAGAATCCGTTTTTTTAACTCTTGACCTCTTGACAGTGCTTAATGGATGAGCATTGagacaaaaattattttaaacaaaatgtctaATTTGGACTCAGAAATAAGTGGCCCATCTAGGTGTCCTATAAACAAGTTTCTTGGTCCTTGTAACAACACTTTATATTTTGTGATGTTTAATGTAAGGATTATTTTTTGACACAGACCCCAGGAGTCCATCTATATTAGGGGGAAATTGAATGTTATTAGGCTGTTGTTAAGGTGCCTTCTTAAAAGACAGGAGTTTTATGGTTAATGGTTTATGTATTAACAGACAATTTTAAGTTGGCAGTTTTATATGACAGATATGTAGAATGTTTTCCCCAGCCTGCTCTTTAGCAAATCTATAAATATTTCATGACTCAtcacttttattcttcttaacAGTATAGGAGTCTGGTACAGACTTCAGAAGCAAATTATGTGCCATTTTCTTCACACGCATTTATTAAGACATGCAAGGAATGAATGTTGCGTTGTAAGTCTGTATAAGTGTACTGAACAGTTGGCTAAGCAACTGCCactattttgattttgtttttatgtttaccCGTTCCATAGTAAATGATATTCTGCTCAAGTCTCAGGGCAGCTCCCTTGGACTCCAGTCCtgagatgaataaaacacatgacaGTGTGAa

Function

GO:

id name namespace
GO:0006998 nuclear envelope organization biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0010867 positive regulation of triglyceride biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0071595 Nem1-Spo7 phosphatase complex cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17617 CTDNEP1, DULLARD, NEM1; CTD nuclear envelope phosphatase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78493 lncRNA upstream 7911 17990435 ~ 17992247 (+) True G66237
TU78438 lncRNA upstream 24799 17973998 ~ 17975359 (+) True G66186
TU78405 lncRNA upstream 81061 17904611 ~ 17919097 (+) True G66169
TU78403 lncRNA upstream 81061 17911594 ~ 17919097 (+) False G66169
TU78468 lncRNA upstream 123084 17873399 ~ 17877074 (+) True G66214
TU78533 lncRNA downstream 80626 18091588 ~ 18096583 (+) True G66263
TU78778 lncRNA downstream 100723 18111685 ~ 18111915 (+) True G66426
TU78810 lncRNA downstream 166272 18177234 ~ 18177642 (+) True G66452
TU79006 lncRNA downstream 370994 18381956 ~ 18382162 (+) True G66637
TU79026 lncRNA downstream 419600 18430562 ~ 18431136 (+) True G66654
XM_026935857.2 mRNA upstream 1942 17992640 ~ 17998216 (+) True elp5
XM_026936445.2 mRNA upstream 31847 17966324 ~ 17968311 (+) True LOC113540162
XM_026936444.2 mRNA upstream 49770 17936846 ~ 17950388 (+) True tnk1
XM_026937074.2 mRNA upstream 100665 17894900 ~ 17899493 (+) True mpdu1b
XM_026936051.2 mRNA upstream 106198 17889527 ~ 17893960 (+) False LOC113539925
XM_026937096.2 mRNA downstream 4167 18015129 ~ 18019079 (+) True gabarapb
XM_026936730.2 mRNA downstream 9249 18020211 ~ 18028051 (+) False spata6l
XM_026936735.2 mRNA downstream 9249 18020211 ~ 18026457 (+) False spata6l
XM_026936729.2 mRNA downstream 9250 18020212 ~ 18028051 (+) False spata6l
XM_026936727.2 mRNA downstream 9250 18020212 ~ 18028051 (+) False spata6l
trnat-agu other upstream 235624 17764461 ~ 17764534 (+) True trnat-agu
TU78354 other upstream 380079 17609704 ~ 17620079 (+) True LOC113539940
XR_003404112.1 other upstream 1238283 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 1238511 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 1238820 16761266 ~ 16761338 (+) True LOC113540743
XR_004577948.1 other downstream 102482 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 186350 18197312 ~ 18208564 (+) True G66492
TU79253 other downstream 845494 18856456 ~ 18858652 (+) True G66864
trnah-gug_4 other downstream 1817349 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 1817857 19828819 ~ 19828890 (+) True trnah-gug_5

Expression Profile