RNA id: XM_026935857.2


Basic Information

Item Value
RNA id XM_026935857.2
length 2403
RNA type mRNA
GC content 0.40
exon number 8
gene id elp5
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17992640 ~ 17998216 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTCTtgtgatgtaaatgtgtattaaaGTGAGAAAGAAGAAGCAGTGGAGCCATGTTGTGTCTCTCGCGCAGTCTCATGTCTATGACGTGAACACACGAAGCTCCAGCACATCAGGGGGCGACATGCACAATACAGTCGCATATTAAAGAGTCCGAGTGTAAGCGAAGAACCCGCATGTCGTTAATCAACACATTGATGATTATTTTGGACCAGATGCCGCAGAGGTTCAGGTTTTAGTGCTTAAGCCTGTGTGTAGCTGTAGGACCAGAGCAGCAGGTTAAAGCTTGGTGGACTGTGTAACCGGTACATCAGTGGAGTCTTTTACCTGTCAGGCTGCACGCGCAGGAGCGCTCACAATGCTGTCTGAGGGGCTACAGGCAACAGAACCGGGAGGATTCCTTCTTATTCGAGACACTGCTTGTTATTCTGGACGACGCCTGCTTAAGTATTACATAAACTGCGCCTTAAAGAGaggGGAAGCTGTCCATGTGTTGGGGTTTGAAATTCCTGAGCATGAGTTGTGTGCCGAACTGGACAGAAATTACCTGCATTTGTTTCACTATCACAATGCATACACCGACCCGCTGGGCTGGACCAAGCAGTCCTCGTTCACAGTGAAGCATTTCAGTGCAACAGAAATGACACGGCTACTTCAGGAGACACAACAGGCCAAAGCTTCAGTACTTGTCATTGACTCTTTGTCTTGGGTTGTAAGACATCATGACACTGTTGCCGTCTGTCAAGAACTTCAGAAGCTCAGGAAAGGAGGCTCTGTAAGGCTGATCTTTGGTCTCCTACACACGGATCTTCATCAGCAAGGCGTTGTTGGAACTGTAAGCCACTTAGCCAGCACTGTAATTTCTGTTACACCTGTGAACAATGCACGCTATGCTGTGGCCAAGATATCACACCGTAAAAAATCTGGGAAGGTTATGCAGAAGgaggaGTTTTTCACTTTAACAGAGGACTTGACACTGTCAATAGAGACTAAACCCAACCAATCTGGAAATGTTGAAACAGACTTGCACACGAAGTCTGAGGTGGATCCAGCGTCAAATTTGACCTTTAATCTTCGTTTGTCTGAGGTTGAAAGAGAGGCAAAGGAAAAAGTTCCTCTACCCTTTGTCTTCAGTGAAGAAAAAAAGTCTGCTCTCCTGAGGCCAGGCCGAGGTTCTGGACGCATTATGTATGAACCTGATGCCAATGATGACATTGATGAAGAAGACCCAGATGATGACCTTGATGTCTAAAAGGTCCCTTTCGAACATTGTTAGAAGCTCTGATGGTTCTCTGGAGCCTGAGCtccaatattttaaataaaaaaattctgtacTTAGGCCAGTTTAAACATGTGGCCTAAACATCATGCTATGGTAAGGATGAGACTTTTGGAAGTACAATACCAGCAATATTGCACATTATAGTGTCTGTTTTTGATCTTCTATACTGTCTGTTCAAAGGGACTGGTTTGTCATTGTAAATGACTGCATCCCAAATCACGTACAAGCATACAACATAGTGTGCTGAAATATTACACCCTTTATGGAACAGATAACTGACAGCGATGTATATTtttgacatactatttagtgtGTAGCAACTCTTATGCAGCTAGCACCACAAGACAAAGTGGcctttaaaaacaatgttttgtttttaaacatatagACAACCCCATGTGCAAAGACAGTGATGCACTTCTCAGCTGCCTTAAGCCCAAGCATGTCcagacaaaataattttatttatttattttttttgcaagtatACAGTGATTTGTGCTCAGAAGGGGACATCTCTTTCGTCAAATGGGAGATTTTGCGTATGATCTGTATCTAGCTAGTTTATCACAGTTTAGTTGTCTGTTATGAGTACCCCCTAATGAATTGGCGTCTAGGCTTCACATGAAATCTAATTTGCTGAAAGGCTGTGTACCTTTTGTGAAAAAGGGCACTAAAACTTTTAACCACAGTTAGAGTTATTATTGATTACTAactgataaagcagttactgaaaaagaTGAATAAACCCTTATAAATGATTAGAATGAAAATAACTACACaaattttgactgtggcatatAAAACAAGTTGCATAATTAGAACAAACATAAGCAGTTACCTATTTAACCTTTTCATTTTGGTTGTAATGGGATTAAGATATTCACACACTATACTGGGTAAAATATAGTGGAGTTTGTTGTGAAGGTAATTATCATAAGCAACAAAATCACAGAATATCTATGTAtaataacaaagaaaattatttataaatatgctCTCCCACGTTTGtgagtggaatttttttttttttttttgtatactaCTACATAAATTTTATTCAGTAATTCTTTCATACAtttggcctcatttatcaatcttgtAATAAAGTTGTAAAATGA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0005634 nucleus cellular_component
GO:0033588 elongator holoenzyme complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K11376 ELP5, IKI1; elongator complex protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78493 lncRNA upstream 393 17990435 ~ 17992247 (+) True G66237
TU78438 lncRNA upstream 17281 17973998 ~ 17975359 (+) True G66186
TU78405 lncRNA upstream 73543 17904611 ~ 17919097 (+) True G66169
TU78403 lncRNA upstream 73543 17911594 ~ 17919097 (+) False G66169
TU78468 lncRNA upstream 115566 17873399 ~ 17877074 (+) True G66214
TU78533 lncRNA downstream 93372 18091588 ~ 18096583 (+) True G66263
TU78778 lncRNA downstream 113469 18111685 ~ 18111915 (+) True G66426
TU78810 lncRNA downstream 179018 18177234 ~ 18177642 (+) True G66452
TU79006 lncRNA downstream 383740 18381956 ~ 18382162 (+) True G66637
TU79026 lncRNA downstream 432346 18430562 ~ 18431136 (+) True G66654
XM_026936445.2 mRNA upstream 24329 17966324 ~ 17968311 (+) True LOC113540162
XM_026936444.2 mRNA upstream 42252 17936846 ~ 17950388 (+) True tnk1
XM_026937074.2 mRNA upstream 93147 17894900 ~ 17899493 (+) True mpdu1b
XM_026936049.2 mRNA upstream 98679 17889483 ~ 17893961 (+) True LOC113539925
XM_026935856.2 mRNA downstream 1942 18000158 ~ 18010962 (+) True ctdnep1b
XM_026937096.2 mRNA downstream 16913 18015129 ~ 18019079 (+) True gabarapb
XM_026936730.2 mRNA downstream 21995 18020211 ~ 18028051 (+) False spata6l
XM_026936735.2 mRNA downstream 21995 18020211 ~ 18026457 (+) False spata6l
XM_026936729.2 mRNA downstream 21996 18020212 ~ 18028051 (+) False spata6l
trnat-agu other upstream 228106 17764461 ~ 17764534 (+) True trnat-agu
TU78354 other upstream 372561 17609704 ~ 17620079 (+) True LOC113539940
XR_003404112.1 other upstream 1230765 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 1230993 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 1231302 16761266 ~ 16761338 (+) True LOC113540743
XR_003403977.2 other downstream 1942 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 115228 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 199096 18197312 ~ 18208564 (+) True G66492
TU79253 other downstream 858240 18856456 ~ 18858652 (+) True G66864
trnah-gug_4 other downstream 1830095 19828311 ~ 19828382 (+) True trnah-gug_4

Expression Profile