RNA id: XM_034303290.1


Basic Information

Item Value
RNA id XM_034303290.1
length 1670
RNA type mRNA
GC content 0.56
exon number 7
gene id peli3
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20661726 ~ 20677144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGGTTCATAAGTCTGATTGCATGTGGAAAGAAGCATTTTCAGTGTTTAGTGGATTTGATCTGAAGCTGCTGCTGGAGAGAAGGAGTTCAAATATGCGGTGGTCTTGGTGCAAGGGctgCGAGTCCCTTCACGTGGCCCTTAGACATGGTTTTAGAAGGAAGCTCTGAGGCCCTGTGCCCTCCTCCGTCCCTGGAGCTGCGCCCATCATGCAACAAGAGCCAACCGTCGCCCCCTCTAGACTCTGGCTCACAATCCCATGATGCCATATTCCCTGGGGACAAGGAGCCTATCAAGTATGGAGAGCTGATCGTGCTGGGACATAATGGTTCACTAGTGGGTGGTGATAAAGGGCGCAGGAGGAGTCGACTAGCTCTTTACAAGAGACCCAAAGCCAACGGCGTCAAACCTGATGTCATCCACAATGTATCCACACCTCTGGTGTCAAAGgcacTGAGCAACAAAAGCCAGCACAGTATCTCCTACACACTGTCAAGGAGTCATTCTGTTATAGTAGAGTACACACATGACTCCAACACAGATATGTTTCAGATTGGCCGTTCCACAGAGAGCATGATTGACTTTGTGGTGACGGATATGGCGGGCAGCAGCGGGCAGTGCCAAGGTCAGAGTCAGGGGGGTGCGGGTGGAGACGGGGGCCAGTCAGCACAGAGCACCATCTCTCGCTATGCTTGCCGCATCATGTGTGAGCGTAGTGCCCCCTACACAGCCCGCATCTATGCTGCTGGCTTCGACTCCTCCAAAAACATCTTCCTCGGGGAGCGGGCAGCTAAATGGCGGACCTCAGACGGCTTGATGGATGGGCTGACTACCAATGGGGTGTTAGTGATGCACCCTGCGGGGGAATTTGTGTCTGAGCCCACTCCTGGGGTGTGGCGGGAGATATCAGTGTGCGGGAACGTCTTCGCCCTGAGAGAGACACGCTCGGCTCAACAGAGAGGCAAACTGGTCGAGAATGAGTCAAACACACTGCAGGACGGCTCTCTGATTGACCTGTGTGGCGCCACGCTGCTGTGGCGGAGCCCGAGTGGCCTGCGGCGCACGCCTACGCTCAAGCAGCTCGAGTCACTGCGCCAGGAGCTGAATGCTGCACGTCCTCAGTGTCCGGTGGGCTTCAACACGCTAGCCTTCCCCAGCCTGGCGCAGCGTGCCACCGTCGACAAGAAGCAGCCATGGGTCTACATGAACTGCGGTCACGTGCACGGCTACCACAACTGGGGCTTCCGCAGGGAGAAGGATAAGGCAGTGGGGGCAGCTGAGCGCGAGTGCCCCATGTGCAGGAAGGTGGGCCCCTACGTGCCCCTGTGGCTGGGCTGCGAGGGTGGCCTATATCTGGACGCAGGGCCCCCGACACACGCTTTCTGCCCCTGCGGCCACGTGTGCTCAGAGAAAACAGCGCAAGGCTGGAGTCAGATCCCACTGCCGCACGGAACACACGCCTTCCACGCAGCATGCCCATTCTGTGGCACCTGGCTCACTGGCCAGCACGGCCACGTCAAGCTCATCTTCCAAGGCCCCGTTGACTGAGACAGCAGGACTGCATGTGAAAGAAAAGGACTAAAGGACTCGAGGAGTAAATGTATCGGACTGTTACTGCACCAAGATGATGTTGAGagaatatgtaaataaaggTGATGGAATAAAAAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80746 lncRNA downstream 25527 20635904 ~ 20636199 (-) True G68108
TU80745 lncRNA downstream 25933 20635532 ~ 20635793 (-) True G68107
TU80738 lncRNA downstream 30016 20630166 ~ 20631710 (-) True G68106
TU80707 lncRNA downstream 90796 20570399 ~ 20570930 (-) True G68080
TU80702 lncRNA downstream 94968 20559378 ~ 20566758 (-) True G68075
TU80832 lncRNA upstream 103150 20778553 ~ 20816280 (-) False znf16l
TU80840 lncRNA upstream 128014 20803417 ~ 20804104 (-) True G68186
TU81181 lncRNA upstream 629361 21304764 ~ 21313873 (-) False chchd7
TU81229 lncRNA upstream 645415 21320818 ~ 21321146 (-) True G68466
TU81220 lncRNA upstream 650673 21326076 ~ 21329250 (-) True G68462
XM_026937254.2 mRNA downstream 157318 20497680 ~ 20504408 (-) True ecsit
XM_026936378.2 mRNA downstream 176068 20479260 ~ 20485658 (-) True si:dkey-106g10.7
XM_026937198.2 mRNA downstream 206264 20447657 ~ 20455462 (-) False men1
XM_034304099.1 mRNA downstream 206264 20447657 ~ 20455462 (-) False men1
XM_026937199.2 mRNA downstream 207109 20447256 ~ 20454617 (-) True men1
XM_026936122.2 mRNA upstream 80473 20755876 ~ 20768426 (-) True sstr1b
XM_026935805.2 mRNA upstream 103135 20778538 ~ 20825520 (-) True znf16l
XM_026935868.2 mRNA upstream 160358 20835761 ~ 20838098 (-) True LOC113539812
XM_026937001.2 mRNA upstream 220038 20895441 ~ 20899092 (-) True mad2l1
XM_034303394.1 mRNA upstream 336849 21012252 ~ 21106343 (-) False ank2b
XR_003404107.1 other downstream 517837 20143784 ~ 20143889 (-) True LOC113540737
TU80179 other downstream 695888 19962616 ~ 19965838 (-) False snrpf
XR_004578057.1 other downstream 718359 19931590 ~ 19943367 (-) False LOC113539792
TU81225 other upstream 650643 21326046 ~ 21329250 (-) False G68462
XR_004578106.1 other upstream 692847 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 692847 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other upstream 692847 21368250 ~ 21371004 (-) False LOC113539989
trnaa-ugc other upstream 742765 21418168 ~ 21418239 (-) True trnaa-ugc

Expression Profile